View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_high_3 (Length: 788)
Name: NF17288_high_3
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 426 - 770
Target Start/End: Complemental strand, 7909189 - 7908845
Alignment:
| Q |
426 |
atcacatagtaatgttattgtgattgtatgtatgtctcttagaatttagtttcttacttttatggttgtacggattttgttttttgattgagtttgtttg |
525 |
Q |
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| T |
7909189 |
atcacatagtaatgttattgtgattgtatgtatgtctcttagaatttagtttcttacttttatggttgtacggattttgtgttttgattgagtttgtttg |
7909090 |
T |
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| Q |
526 |
attcaatttgccgacaatacaaaaaacattagtttgatatttgattggttctgttggagaattctagtttggttggttgatctagttggttgtgaaaatt |
625 |
Q |
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| T |
7909089 |
attcaatttgccgacaatacaaaaaacattagtttgatatttgattggttctgttggagaattctagtttggttggttgatctagttggttgtgaaaatt |
7908990 |
T |
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| Q |
626 |
tggattgttcttgttggaaataatatggctaacgaaggaaacaaaagcaatgatttctatgcagttttgggattgaataaggaatgctctgattcagagc |
725 |
Q |
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| T |
7908989 |
tggattgttcttgttggaaataatatggctaacgaaggaaacaaaagcaatgatttctatgcagttttgggattgaataaggaatgctctgattcagagc |
7908890 |
T |
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| Q |
726 |
taaggaatgcttataagaaacttgcactggttagaaatgcttata |
770 |
Q |
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| T |
7908889 |
taaggaatgcttataagaaacttgcactggttagaaatgcttata |
7908845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 246 - 395
Target Start/End: Complemental strand, 7909369 - 7909220
Alignment:
| Q |
246 |
gtctagtattagaggtctctagagtattcatgaggctaagtctttacacttcaacccttcattccatctagtctaaaacaaaacaaaatgctaagtacta |
345 |
Q |
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| T |
7909369 |
gtctagtattagaggtctctagagtattcatgaggctaagtctttacacttcaacccttcattccatctagtctaaaacaaaacaaaatgctaagtacta |
7909270 |
T |
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| Q |
346 |
tgtatctattcacaaacatgtagccgcaactcaagttgtcatccaagttg |
395 |
Q |
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| T |
7909269 |
tgtatctattcacaaacatgtagccgcaactcaagttgtcatccaagttg |
7909220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 41 - 206
Target Start/End: Complemental strand, 7909575 - 7909409
Alignment:
| Q |
41 |
atcaaaaaagatcaacgaagttaaacaatcggagtttatatccatactaatgtcaatnnnnnnnn-tgacatattttagtatactttttgtaattttgat |
139 |
Q |
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| T |
7909575 |
atcaaaaaagattaacgaagttaaacgatcggagtttatgtccaaactaatgtcaataaaaaaaaatgacatattttagtatactttttgtaattttgat |
7909476 |
T |
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| Q |
140 |
acgtttcaatactataatgagagcgtctcacatatttattgaccaaaatggttgtttgtgcatcttt |
206 |
Q |
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| T |
7909475 |
acatttcaatactatagtaacatcgtctcacatattcattgaccaaaatggttgtttgtgcatcttt |
7909409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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