View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17288_high_31 (Length: 384)

Name: NF17288_high_31
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17288_high_31
NF17288_high_31
[»] chr7 (6 HSPs)
chr7 (125-361)||(24903602-24903842)
chr7 (1-60)||(24903872-24903931)
chr7 (194-275)||(5862765-5862846)
chr7 (209-282)||(2463433-2463506)
chr7 (209-273)||(27597697-27597760)
chr7 (209-309)||(2463117-2463218)
[»] chr3 (5 HSPs)
chr3 (194-309)||(40195902-40196018)
chr3 (196-309)||(16143399-16143512)
chr3 (209-324)||(23162131-23162246)
chr3 (209-304)||(43978672-43978768)
chr3 (209-270)||(43481588-43481649)
[»] chr8 (4 HSPs)
chr8 (194-324)||(2954307-2954437)
chr8 (209-309)||(5981539-5981640)
chr8 (196-245)||(3670883-3670932)
chr8 (209-277)||(5981830-5981898)
[»] chr2 (5 HSPs)
chr2 (194-309)||(19548106-19548220)
chr2 (207-309)||(11727741-11727843)
chr2 (196-273)||(28226334-28226411)
chr2 (209-273)||(13792591-13792655)
chr2 (209-245)||(19547894-19547930)
[»] chr4 (6 HSPs)
chr4 (196-309)||(10396377-10396490)
chr4 (154-306)||(47680584-47680741)
chr4 (196-334)||(11197162-11197300)
chr4 (209-273)||(10396128-10396192)
chr4 (258-309)||(47680873-47680925)
chr4 (213-309)||(47681117-47681216)
[»] chr6 (4 HSPs)
chr6 (209-309)||(7301397-7301497)
chr6 (211-274)||(6250080-6250143)
chr6 (258-324)||(11637867-11637933)
chr6 (212-270)||(15092059-15092117)
[»] chr5 (4 HSPs)
chr5 (209-309)||(13042673-13042773)
chr5 (209-309)||(13112671-13112771)
chr5 (213-270)||(26420849-26420906)
chr5 (209-272)||(34103552-34103615)
[»] chr1 (1 HSPs)
chr1 (194-309)||(31973417-31973532)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 125 - 361
Target Start/End: Complemental strand, 24903842 - 24903602
Alignment:
Q  125 aagcaatgtgctagttcatgatcactaacagacttagacaccacatctacatcaaaaactttaatgtatta----tatgggtatcatatcttatatatcc 220  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||    || ||||||||||||||||||||||    
T  24903842 aagcaatgtgctagttcatgatcactaacagatttagacaccacatctgcatcaaaaactttaaggtattagttatacgggtatcatatcttatatatcc 24903743  T
Q  221 aacatttcctccatttctaatcgatttggaacctatccactcacacttgattttcaataatccccccttcaagtgtgagtcacccacattagtagattga 320  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  24903742 aacatttcctccatttctaatcgatttggaacctacccactcacacttgattttcaataatcctcccttcaagtgtgagtcacccacgttagtagattga 24903643  T
Q  321 tccatacctggatctcactccgagcgagcctaaccaagtct 361  Q
    |||||||  ||||||||||| ||||||||||||||||||||    
T  24903642 tccatactaggatctcactctgagcgagcctaaccaagtct 24903602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 24903931 - 24903872
Alignment:
Q  1 aataatttaagttatacagtccttgctaatttgtgtcataaatgataagagcacatatta 60  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24903931 aataatttaagttatatagtccttgctaatttgtgtcataaatgataagagcacatatta 24903872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 275
Target Start/End: Original strand, 5862765 - 5862846
Alignment:
Q  194 tatatgggtatcatatcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattttc 275  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| |  ||  ||||||||||||||||||    
T  5862765 tatatgggtatcatctcttatatatccaacatttcctccttttctaatcaatttgggatataatcactcacacttgattttc 5862846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 2463506 - 2463433
Alignment:
Q  209 tcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattttcaataatc 282  Q
    |||||||||||||| ||||||||||||||||| | || ||| || ||   |||||||||||||||| |||||||    
T  2463506 tcttatatatccaatatttcctccatttctaaccaatgtgggacataattactcacacttgatttttaataatc 2463433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 27597760 - 27597697
Alignment:
Q  209 tcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattt 273  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||  ||| ||||||||||| ||||    
T  27597760 tcttatatatccaacgtttgctccatttctaatcgatgtggaatatat-cactcacacttaattt 27597697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 309
Target Start/End: Complemental strand, 2463218 - 2463117
Alignment:
Q  209 tcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattttc-aataatccccccttcaagtgtgagtcacccac 307  Q
    |||||||||||||||||||||||  |||||| ||||| ||  || ||  ||||||||||| |||||| || ||||  | | | |||||||||||||||||    
T  2463218 tcttatatatccaacatttcctcattttctagtcgatgtgagacataatcactcacacttaattttccaacaatcttctcctaaagtgtgagtcacccac 2463119  T
Q  308 at 309  Q
    ||    
T  2463118 at 2463117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 40195902 - 40196018
Alignment:
Q  194 tatatgggtatcatatcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattt-tcaataatccccccttcaa 292  Q
    ||||||||| || | ||||||||||||||| ||||||||||| ||| ||||| || ||| ||  ||||||||||||||||  ||| |||| |||| ||||    
T  40195902 tatatgggtctcctctcttatatatccaacgtttcctccattcctagtcgatgtgaaacataatcactcacacttgatttcccaacaatctccccctcaa 40196001  T
Q  293 gtgtgagtcacccacat 309  Q
    |||||||||||||||||    
T  40196002 gtgtgagtcacccacat 40196018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 309
Target Start/End: Complemental strand, 16143512 - 16143399
Alignment:
Q  196 tatgggtatcatatcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattttcaataatccccccttcaagtg 295  Q
    ||||||| || | ||||||||||||||||||| |||||||||||   ||| |||||| |   |||||||||||||||| ||| |||| |||| |||||||    
T  16143512 tatgggtctcgtctcttatatatccaacatttgctccatttctagcagatgtggaacattatcactcacacttgatttccaacaatctccccctcaagtg 16143413  T
Q  296 tgagtcacccacat 309  Q
    ||| ||||||||||    
T  16143412 tgactcacccacat 16143399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 324
Target Start/End: Complemental strand, 23162246 - 23162131
Alignment:
Q  209 tcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattt-tcaataatccccccttcaagtgtgagtcacccac 307  Q
    |||||||| |||||| ||||||||||| ||||||||| ||| || ||  ||||||||||| |||| |||  ||||||||| |||||||||||||||||||    
T  23162246 tcttatatgtccaacgtttcctccattcctaatcgatgtgggacataatcactcacactttatttctcaccaatcccccc-tcaagtgtgagtcacccac 23162148  T
Q  308 attagtagattgatcca 324  Q
    |||| |||  |||||||    
T  23162147 attactagcctgatcca 23162131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 43978672 - 43978768
Alignment:
Q  209 tcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgatttt-caataatccccccttcaagtgtgagtcacc 304  Q
    ||||||||||||||  ||||||||||| ||| ||||| ||| || ||  ||||||||||||||||| ||| |||| |||| |||||||||| |||||    
T  43978672 tcttatatatccaatgtttcctccattcctagtcgatgtgggacataatcactcacacttgattttccaacaatctccccctcaagtgtgaatcacc 43978768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 43481649 - 43481588
Alignment:
Q  209 tcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttga 270  Q
    ||||||||||||||||||||||||||| ||| ||||| ||  || ||  |||||||||||||    
T  43481649 tcttatatatccaacatttcctccattcctagtcgatgtgagacataatcactcacacttga 43481588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 324
Target Start/End: Original strand, 2954307 - 2954437
Alignment:
Q  194 tatatgggtatcatatcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattttcaataatccccccttcaag 293  Q
    ||||||||| || | ||||||||||||||||||| ||||||| ||| ||||| ||| |  ||  |||||||||||||   |||| |||| |||| |||||    
T  2954307 tatatgggtctcctctcttatatatccaacattttctccattcctagtcgatgtgggaaataatcactcacacttgaaactcaacaatctccccctcaag 2954406  T
Q  294 tgtgagtcacccacattagtagattgatcca 324  Q
    |||||||||||||||| | ||| ||||||||    
T  2954407 tgtgagtcacccacatcactagcttgatcca 2954437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 309
Target Start/End: Original strand, 5981539 - 5981640
Alignment:
Q  209 tcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattttc-aataatccccccttcaagtgtgagtcacccac 307  Q
    ||||||||||||||| ||| ||||||| ||| ||||| ||| || ||  |||||||||||||||| | || |||| |||| ||||| |||||||||||||    
T  5981539 tcttatatatccaacgttttctccattcctagtcgatgtgggacataatcactcacacttgatttccaaacaatctccccctcaagcgtgagtcacccac 5981638  T
Q  308 at 309  Q
    ||    
T  5981639 at 5981640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 3670883 - 3670932
Alignment:
Q  196 tatgggtatcatatcttatatatccaacatttcctccatttctaatcgat 245  Q
    ||||||| |||| ||||||||||||||| ||||||||||||||| |||||    
T  3670883 tatgggtctcatctcttatatatccaacgtttcctccatttctagtcgat 3670932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 277
Target Start/End: Original strand, 5981830 - 5981898
Alignment:
Q  209 tcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattttcaa 277  Q
    ||||||||||||||| ||||||||||| ||||| ||| ||| || ||  | ||||||||||||| ||||    
T  5981830 tcttatatatccaacgtttcctccattcctaattgatgtgggacataatccctcacacttgattatcaa 5981898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 194 - 309
Target Start/End: Complemental strand, 19548220 - 19548106
Alignment:
Q  194 tatatgggtatcatatcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattttcaataatccccccttcaag 293  Q
    ||||||||| || | ||||||||||||||||||||||| ||||||| ||||| ||| || || |||||||| |||||    ||| |||||| || |||||    
T  19548220 tatatgggtctcctctcttatatatccaacatttcctctatttctagtcgatgtgggacataaccactcacgcttgaaacccaacaatccctcc-tcaag 19548122  T
Q  294 tgtgagtcacccacat 309  Q
    ||||||||||||||||    
T  19548121 tgtgagtcacccacat 19548106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 309
Target Start/End: Original strand, 11727741 - 11727843
Alignment:
Q  207 tatcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattttcaataatccccccttcaagtgtgagtcaccca 306  Q
    |||||| |||||| ||| ||| ||||||||||| || || | |||| ||   |||||||||| ||||||||||||| |||  || |||||||||||||||    
T  11727741 tatcttttatatctaacgttttctccatttctagtcaatgtagaacataattactcacacttaattttcaataatctccctctcgagtgtgagtcaccca 11727840  T
Q  307 cat 309  Q
    |||    
T  11727841 cat 11727843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 28226411 - 28226334
Alignment:
Q  196 tatgggtatcatatcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattt 273  Q
    ||||||| || | ||||||||||||||| ||||||||||||||| ||||| ||| || |   ||||||||||||||||    
T  28226411 tatgggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtgggacattaacactcacacttgattt 28226334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 13792591 - 13792655
Alignment:
Q  209 tcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattt 273  Q
    ||||||||||| || |||||||||||||||| | ||| ||| || ||  ||||||||||||||||    
T  13792591 tcttatatatcaaatatttcctccatttctagttgatgtgggacataatcactcacacttgattt 13792655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 19547930 - 19547894
Alignment:
Q  209 tcttatatatccaacatttcctccatttctaatcgat 245  Q
    |||||||||||||||||||| |||||||||| |||||    
T  19547930 tcttatatatccaacatttcttccatttctagtcgat 19547894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 196 - 309
Target Start/End: Complemental strand, 10396490 - 10396377
Alignment:
Q  196 tatgggtatcatatcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattttcaataatccccccttcaagtg 295  Q
    ||||||| || | ||||||||||||||||||||||||||||||| || || ||  || ||  |||||||||||||||| ||| |||| |||| ||||||     
T  10396490 tatgggtctcctctcttatatatccaacatttcctccatttctagtcaatatgagacataatcactcacacttgatttccaacaatctccccctcaagta 10396391  T
Q  296 tgagtcacccacat 309  Q
    ||| || |||||||    
T  10396390 tgactcgcccacat 10396377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 154 - 306
Target Start/End: Complemental strand, 47680741 - 47680584
Alignment:
Q  154 agacttagacaccacatctacatcaaaaactttaatgtat----tatatgggtatcatatcttatatatccaacatttcctccatttctaatcgatttgg 249  Q
    ||||||||||||||||||| || | ||||| |||| | ||    ||||||||| || | || ||||||| |||  |||||||||||| |||||||| |||    
T  47680741 agacttagacaccacatctccacccaaaaccttaaggcatcaggtatatgggtctcctctcatatatattcaatgtttcctccatttataatcgatgtgg 47680642  T
Q  250 aacctatccactcacacttgatttt-caataatccccccttcaagtgtgagtcaccca 306  Q
     || ||  ||||||||||| ||||| ||| ||||  ||| ||||||||||||||||||    
T  47680641 gacataatcactcacacttaattttccaacaatcttcccctcaagtgtgagtcaccca 47680584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 334
Target Start/End: Complemental strand, 11197300 - 11197162
Alignment:
Q  196 tatgggtatcatatcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattttcaataatccccccttcaagtg 295  Q
    ||||||| || | ||||||||||||||| ||||||||||||||| ||||| ||   | ||  |||||||||||| |||| || |||| |||  |||||||    
T  11197300 tatgggtctcctctcttatatatccaacgtttcctccatttctagtcgatgtgaggcataatcactcacacttggtttttaacaatctcccaatcaagtg 11197201  T
Q  296 tgagtcacccacattagtagattgatccatacctggatc 334  Q
    | | |||||||||| | |||  ||||||| ||| |||||    
T  11197200 ttactcacccacatcactaggatgatccacaccaggatc 11197162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 10396192 - 10396128
Alignment:
Q  209 tcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattt 273  Q
    |||||||||| |||||||||||||||||||  ||||| ||  || ||  ||||||||||||||||    
T  10396192 tcttatatattcaacatttcctccatttcttgtcgatgtgagacataatcactcacacttgattt 10396128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 47680925 - 47680873
Alignment:
Q  258 cactcacacttgattttc-aataatccccccttcaagtgtgagtcacccacat 309  Q
    |||||||||||||||| | || |||| |||| |||||||||||||||||||||    
T  47680925 cactcacacttgatttcccaacaatctccccctcaagtgtgagtcacccacat 47680873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 309
Target Start/End: Complemental strand, 47681216 - 47681117
Alignment:
Q  213 atatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattt-tcaataatccccccttcaagtgtg--agtcacccacat 309  Q
    ||||||| ||| |||||||||||||||||||||  || || ||  ||||||||||| ||||  ||| |||| |||| |||||||||  ||||||||||||    
T  47681216 atatatcaaacgtttcctccatttctaatcgatgcgggacataatcactcacactttatttcccaacaatctccccctcaagtgtgttagtcacccacat 47681117  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 309
Target Start/End: Original strand, 7301397 - 7301497
Alignment:
Q  209 tcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattttcaataatccccccttcaagtgtgagtcacccaca 308  Q
    ||||||||||||||| ||||||||||||||| ||||| ||| || ||  ||||||||||| |||||||| |||  || | |||| ||||| |||||||||    
T  7301397 tcttatatatccaacgtttcctccatttctagtcgatgtgggacataatcactcacacttaattttcaacaatatcctcctcaactgtgactcacccaca 7301496  T
Q  309 t 309  Q
    |    
T  7301497 t 7301497  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 211 - 274
Target Start/End: Complemental strand, 6250143 - 6250080
Alignment:
Q  211 ttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgatttt 274  Q
    |||||||||||||||||||||||| | |||||||| ||| || ||  |||||||||||||||||    
T  6250143 ttatatatccaacatttcctccatgtttaatcgatgtgggacataatcactcacacttgatttt 6250080  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 11637867 - 11637933
Alignment:
Q  258 cactcacacttgattttcaataatccccccttcaagtgtgagtcacccacattagtagattgatcca 324  Q
    |||||||||||||||||||| ||||  ||| |||||||||| ||| |||||| | |||| |||||||    
T  11637867 cactcacacttgattttcaacaatcttcccctcaagtgtgactcaaccacatgactagaatgatcca 11637933  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 15092117 - 15092059
Alignment:
Q  212 tatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttga 270  Q
    |||||||||||||||| ||| ||||||||||||| ||| |  || ||||||||||||||    
T  15092117 tatatatccaacattttctcaatttctaatcgatgtggtatttaaccactcacacttga 15092059  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 309
Target Start/End: Complemental strand, 13042773 - 13042673
Alignment:
Q  209 tcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattttcaataatccccccttcaagtgtgagtcacccaca 308  Q
    ||||||||||| ||  ||| ||||||||||| | ||| ||| || ||  |||||||||||||||| ||| | ||||||| |||||||||| |||||||||    
T  13042773 tcttatatatctaatgtttgctccatttctagttgatgtggcacataatcactcacacttgatttccaacagtccccccctcaagtgtgactcacccaca 13042674  T
Q  309 t 309  Q
    |    
T  13042673 t 13042673  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 309
Target Start/End: Complemental strand, 13112771 - 13112671
Alignment:
Q  209 tcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattttcaataatccccccttcaagtgtgagtcacccaca 308  Q
    ||||||||||| ||  ||| ||||||||||| | ||| ||| || ||  |||||||||||||||| ||| | ||||||| |||||||||| |||||||||    
T  13112771 tcttatatatctaatgtttgctccatttctagttgatgtggcacataatcactcacacttgatttccaacagtccccccctcaagtgtgactcacccaca 13112672  T
Q  309 t 309  Q
    |    
T  13112671 t 13112671  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 26420849 - 26420906
Alignment:
Q  213 atatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttga 270  Q
    ||||||||||||||||||||||||||| ||||| ||| || || | ||||||||||||    
T  26420849 atatatccaacatttcctccatttctagtcgatgtgggacttaactactcacacttga 26420906  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 272
Target Start/End: Complemental strand, 34103615 - 34103552
Alignment:
Q  209 tcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgatt 272  Q
    ||||||||||||   |||||||||||||||| ||||| |||||| ||  |||||||||||||||    
T  34103615 tcttatatatcctttatttcctccatttctattcgatgtggaacataatcactcacacttgatt 34103552  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 31973417 - 31973532
Alignment:
Q  194 tatatgggtatcatatcttatatatccaacatttcctccatttctaatcgatttggaacctatccactcacacttgattttcaataatccccccttcaag 293  Q
    |||||| ||||| | ||||||||||  |||  |||||||||||||| ||| | ||  || ||  |||||||||||||||| ||| |||| |||| |||||    
T  31973417 tatatgtgtatcctctcttatatatgtaacggttcctccatttctagtcggtgtgagacataatcactcacacttgatttccaacaatctccccctcaag 31973516  T
Q  294 tgtgagtcacccacat 309  Q
    ||||| |||| |||||    
T  31973517 tgtgactcactcacat 31973532  T

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