View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17288_high_41 (Length: 340)
Name: NF17288_high_41
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_41 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 47366397 - 47366081
Alignment:
| Q |
16 |
tgtgatgcatctgtaacctcaacttaaaacacccgatccaagggatgacaggtaggtaatatatagttgataaacttcagtcagttttggcaaatagcgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47366397 |
tgtgatgcatctgtaacctcaacttaaaacacccgatccaagggatgacaggtaggtaatatatagttgataaacttcagtcagttttggcaaatagcgg |
47366298 |
T |
|
| Q |
116 |
ctatagaggtggtgctatagcactatagcatagtgaatttgaactaatcgtcaaataaatgctattgcagcgccacagcgtaatgaaattctaacaaacc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47366297 |
ctatagaggtggtgctatagcactatagcatagtgaatttgaactaatcgtcaaataaatgctattgcagcgccacagcgtaatgaaattctaacaaacc |
47366198 |
T |
|
| Q |
216 |
actaatttccgagatttgcgattaacaacactaactgcagtgaaactttgt--ttttgctatgtgttgaagagtaaaaactaatgatctaatgaaagttg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47366197 |
actaatttccgagatttgcgattaacaacactaactgcagtgaaactttgtttttttgctatgtattgaaaagtaaaaactaatgatctaatgaaagttg |
47366098 |
T |
|
| Q |
314 |
ttaggcccacccctatg |
330 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
47366097 |
ttaggcccacccttatg |
47366081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 9446327 - 9446359
Alignment:
| Q |
107 |
aaatagcggctatagaggtggtgctatagcact |
139 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
9446327 |
aaatagcggctatagtggtggtgctatagcact |
9446359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University