View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_high_42 (Length: 340)
Name: NF17288_high_42
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 35620941 - 35620659
Alignment:
| Q |
19 |
acatcccccaaatcattcttgctggcctgccccc-tacttgtaggtttttgagattacaaataaaagtgttctatttcgtactctataagtggaacagaa |
117 |
Q |
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| T |
35620941 |
acatcccccaaatcattcttgctggcctgcccccctacttgtaggtttttgagattacaaataaaagtgttctatttcgtactctataagtggaacagaa |
35620842 |
T |
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| Q |
118 |
cagatgccaagatttataccatttata--acaatacaattcaacaacttaacccacaatgaaacagctgatcaagtcaatgggctaataagttgtccttc |
215 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35620841 |
cagatgccaagatttataccatttatataacaatacaattcaacaacttaacccacaatgaaacagctgatcaggtcaatgggctaataagttgtccttc |
35620742 |
T |
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| Q |
216 |
aaatgctatgtgcaaattaagagtattgaaatgcacacatgcacacatgtataagatcatcacatcacttgtacgtacatctt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35620741 |
aaatgctatgtgcaaattaagagtattgaaatgcacacatgcacacatgtataagatgatcacatcacttgtacgtacatctt |
35620659 |
T |
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