View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_high_45 (Length: 336)
Name: NF17288_high_45
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_45 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 52531091 - 52530914
Alignment:
| Q |
17 |
agaaagttcacttataaggtggaatctcaaagtttcttagatgttcctcctcttatagttcaggtcagattcttcattcttatgctaattgttcattttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52531091 |
agaaagttcacttataaggtggaatctcaaagtttcttagatgttcctcctcttatagttcaggtcagattcttcattcttatgctaattgttcattttt |
52530992 |
T |
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| Q |
117 |
caaactcttatttctattcaatgaacttatgaaacttcttcccctga---tcatatgtaatgtcattcatttatttcc |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52530991 |
caaactcttatttctattcaatgaacttatgaaacttcttcccctgatcatcatatgtaatgtcattcatttatttcc |
52530914 |
T |
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