View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17288_high_65 (Length: 251)

Name: NF17288_high_65
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17288_high_65
NF17288_high_65
[»] chr8 (44 HSPs)
chr8 (74-237)||(15605954-15606115)
chr8 (74-237)||(15614307-15614468)
chr8 (74-237)||(15637661-15637823)
chr8 (139-237)||(15605652-15605750)
chr8 (74-232)||(15637477-15637634)
chr8 (87-227)||(15613807-15613947)
chr8 (74-233)||(15614125-15614281)
chr8 (87-227)||(15605454-15605594)
chr8 (98-233)||(15605795-15605928)
chr8 (74-233)||(15637294-15637451)
chr8 (75-222)||(15648124-15648269)
chr8 (60-222)||(10894528-10894688)
chr8 (87-233)||(15636941-15637085)
chr8 (75-232)||(15624336-15624491)
chr8 (74-222)||(15637111-15637257)
chr8 (139-237)||(15614004-15614103)
chr8 (149-237)||(15605343-15605431)
chr8 (87-222)||(15624164-15624298)
chr8 (87-222)||(15647952-15648086)
chr8 (139-237)||(20540862-20540960)
chr8 (149-237)||(15613696-15613784)
chr8 (10-207)||(16250407-16250599)
chr8 (149-237)||(15636830-15636918)
chr8 (149-237)||(15923839-15923927)
chr8 (139-208)||(38050224-38050293)
chr8 (60-125)||(4930230-4930294)
chr8 (180-222)||(15624084-15624126)
chr8 (180-222)||(15647872-15647914)
chr8 (151-222)||(10895850-10895921)
chr8 (151-234)||(23689219-23689302)
chr8 (176-234)||(8362284-8362342)
chr8 (75-129)||(15624519-15624572)
chr8 (151-237)||(18666767-18666853)
chr8 (87-128)||(15923950-15923991)
chr8 (151-203)||(23136464-23136516)
chr8 (75-126)||(15648307-15648357)
chr8 (151-206)||(35136703-35136758)
chr8 (151-234)||(45251064-45251147)
chr8 (75-129)||(287360-287413)
chr8 (176-234)||(23161146-23161204)
chr8 (176-206)||(25063972-25064002)
chr8 (88-129)||(15605122-15605162)
chr8 (88-129)||(15613474-15613515)
chr8 (92-129)||(17895030-17895067)
[»] chr3 (10 HSPs)
chr3 (60-233)||(5750579-5750752)
chr3 (60-233)||(5787538-5787711)
chr3 (88-208)||(30160474-30160593)
chr3 (91-208)||(20795354-20795470)
chr3 (176-234)||(2766113-2766171)
chr3 (139-203)||(37197829-37197893)
chr3 (10-49)||(30160610-30160649)
chr3 (92-129)||(6445174-6445211)
chr3 (151-203)||(20919268-20919320)
chr3 (151-203)||(20928230-20928282)
[»] chr5 (4 HSPs)
chr5 (60-222)||(501081-501242)
chr5 (60-237)||(36647926-36648101)
chr5 (151-234)||(27588592-27588675)
chr5 (151-203)||(9663083-9663135)
[»] scaffold0114 (1 HSPs)
scaffold0114 (60-222)||(34269-34429)
[»] chr6 (13 HSPs)
chr6 (10-214)||(33452249-33452450)
chr6 (88-208)||(21992612-21992731)
chr6 (10-214)||(13705427-13705623)
chr6 (139-237)||(15654054-15654152)
chr6 (139-237)||(15664007-15664105)
chr6 (139-203)||(4856970-4857034)
chr6 (151-208)||(27434709-27434766)
chr6 (61-129)||(15654195-15654262)
chr6 (61-129)||(15664144-15664211)
chr6 (92-129)||(4749520-4749557)
chr6 (12-49)||(32681524-32681561)
chr6 (139-203)||(11550248-11550312)
chr6 (191-227)||(33010456-33010492)
[»] chr4 (5 HSPs)
chr4 (60-207)||(17461900-17462045)
chr4 (10-209)||(37069615-37069806)
chr4 (11-125)||(13923218-13923330)
chr4 (75-129)||(24107-24160)
chr4 (151-208)||(18066791-18066848)
[»] chr2 (4 HSPs)
chr2 (111-236)||(11127741-11127866)
chr2 (151-208)||(20103505-20103562)
chr2 (149-234)||(21119825-21119910)
chr2 (176-234)||(24972286-24972344)
[»] scaffold0490 (1 HSPs)
scaffold0490 (88-208)||(9155-9274)
[»] chr1 (7 HSPs)
chr1 (88-208)||(19095355-19095474)
chr1 (151-234)||(22544225-22544308)
chr1 (151-234)||(15535296-15535379)
chr1 (151-237)||(8314046-8314132)
chr1 (176-222)||(45914950-45914996)
chr1 (139-204)||(8106933-8106998)
chr1 (139-204)||(8111579-8111644)
[»] chr7 (2 HSPs)
chr7 (176-234)||(7946573-7946631)
chr7 (151-234)||(29493955-29494038)
[»] scaffold0155 (1 HSPs)
scaffold0155 (176-232)||(26639-26695)
[»] scaffold0003 (1 HSPs)
scaffold0003 (151-208)||(52597-52654)
[»] scaffold0022 (1 HSPs)
scaffold0022 (75-129)||(101135-101188)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 44)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 74 - 237
Target Start/End: Original strand, 15605954 - 15606115
Alignment:
Q  74 caaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccat 173  Q
    |||||||||||| | |||||| |||||||||||| ||| |||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  15605954 caaatgagtcatga-tccattatgattggctcatgaaaaacaaatgagtcatgatcattttttt-attggttgatataaaataaatgtgtcaaaatccat 15606051  T
Q  174 tctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtactttt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15606052 tctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtattttt 15606115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 74 - 237
Target Start/End: Original strand, 15614307 - 15614468
Alignment:
Q  74 caaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccat 173  Q
    |||||||||||| | |||||| |||||||||||| ||| |||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  15614307 caaatgagtcatga-tccattatgattggctcatgaaaaacaaatgagtcatgatcattttttt-attggttgatataaaataaatgtgtcaaaatccat 15614404  T
Q  174 tctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtactttt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15614405 tctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtattttt 15614468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 74 - 237
Target Start/End: Original strand, 15637661 - 15637823
Alignment:
Q  74 caaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccat 173  Q
    |||||||||||| | |||||| |||||||||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||||||| |||    
T  15637661 caaatgagtcatgactccattatgattggctcatgaaaaacaaatgagtcatgatccttttttt-attggttgatataaaataaatgtgtcaaaattcat 15637759  T
Q  174 tctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtactttt 237  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  15637760 tctgattggatgttaagaaaacattaaatgagatgagaaatatgaagatatcacgtgttctttt 15637823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 15605652 - 15605750
Alignment:
Q  139 attggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtactttt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15605652 attggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacgtgtactttt 15605750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 74 - 232
Target Start/End: Original strand, 15637477 - 15637634
Alignment:
Q  74 caaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccat 173  Q
    |||||||||||| | |||||| ||||||| |||| ||| |||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  15637477 caaatgagtcatgactccattatgattggatcatgaaaaacaaatgagtcatgatcctcttttt-attggttgatataaaataaatgtgtcaaaatccat 15637575  T
Q  174 tctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgta 232  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||    
T  15637576 tctgattggatgataggaaaacattaaatgagatgagaaatattaagatgtcacatgta 15637634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 87 - 227
Target Start/End: Original strand, 15613807 - 15613947
Alignment:
Q  87 aatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccattctgattggatga 186  Q
    ||||||||||||||||||||| ||| ||||||||||||||||          ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15613807 aatccattttgattggctcatgaaaaacaaatgagtcatgatgcttttttttattggttgatataaaataaatgtgtcaaaatccattccgattggatga 15613906  T
Q  187 taagaaaacattaaatgagatgagaaatatgaagatatcac 227  Q
    ||||||||||||||||||||||||||||||| |||| ||||    
T  15613907 taagaaaacattaaatgagatgagaaatatgtagatgtcac 15613947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 74 - 233
Target Start/End: Original strand, 15614125 - 15614281
Alignment:
Q  74 caaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccat 173  Q
    |||||||||||| | || ||| |||||||||||||||| ||||||| |||||||||         |||||||||||||||||||||||||||||||||||    
T  15614125 caaatgagtcatga-tctattatgattggctcataaaaaacaaatgggtcatgatcttttttt--attggttgatataaaataaatgtgtcaaaatccat 15614221  T
Q  174 tctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtac 233  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||    
T  15614222 tctgattggatgataaaaaaacattaaatgagatgagaaatatgaagatgtcacgtgtac 15614281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 87 - 227
Target Start/End: Original strand, 15605454 - 15605594
Alignment:
Q  87 aatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccattctgattggatga 186  Q
    ||||||||||||||||||||| ||| ||||||||||||||||          ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15605454 aatccattttgattggctcatgaaaaacaaatgagtcatgatgtttttttttattggttgatataaaataaatgtgtcaaaatccattccgattggatga 15605553  T
Q  187 taagaaaacattaaatgagatgagaaatatgaagatatcac 227  Q
    |||||||||||||| |||||||||||||||| |||| ||||    
T  15605554 taagaaaacattaattgagatgagaaatatgtagatgtcac 15605594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 98 - 233
Target Start/End: Original strand, 15605795 - 15605928
Alignment:
Q  98 attggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacat 197  Q
    |||||||||||||| ||||||| |||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15605795 attggctcataaaaaacaaatgggtcatgatcttttttt--attggttgatataaaataaatgtgtcaaaatccattctgattggatgataaaaaaacat 15605892  T
Q  198 taaatgagatgagaaatatgaagatatcacatgtac 233  Q
    ||||||||||||||||||||||||| |||| |||||    
T  15605893 taaatgagatgagaaatatgaagatgtcacgtgtac 15605928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 74 - 233
Target Start/End: Original strand, 15637294 - 15637451
Alignment:
Q  74 caaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccat 173  Q
    |||||||||||| | |||||| |||||||||||| ||| |||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  15637294 caaatgagtcatga-tccattatgattggctcatgaaaaacaaatgagtcatgatccatttttt-attggttgatataaaataaatgtgtcaaaatccat 15637391  T
Q  174 tctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtac 233  Q
    | | ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||    
T  15637392 tgtcattggatgataggaaaacattaaatgagatgagaaatattaagatgtcacatgtac 15637451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 75 - 222
Target Start/End: Original strand, 15648124 - 15648269
Alignment:
Q  75 aaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccatt 174  Q
    ||||||||||| | ||||||||||||||||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||||||||  ||    
T  15648124 aaatgagtcatga-tccattttgattggctcatgaaaaacaaatgagtcatgatcctttttct-attggttgatataaaataaatgtgtcaaaatctttt 15648221  T
Q  175 ctgattggatgataagaaaacattaaatgagatgagaaatatgaagat 222  Q
     |||||||||||||||||||||||||||||||||||||||||||||||    
T  15648222 ttgattggatgataagaaaacattaaatgagatgagaaatatgaagat 15648269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 222
Target Start/End: Complemental strand, 10894688 - 10894528
Alignment:
Q  60 catgtattaatttacaaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaat 159  Q
    ||||||||||||||||| |||||||| | ||||||||||||||||||| ||| |||||||||| || |||         |||||||||||||||||||||    
T  10894688 catgtattaatttacaattgagtcatga-tccattttgattggctcatgaaaaacaaatgagttataatcattttttt-attggttgatataaaataaat 10894591  T
Q  160 gtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagat 222  Q
    |||||| |||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  10894590 gtgtcataatcaattttgattggatgataagaaaacattaaatgatatgagaaatatgaagat 10894528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 87 - 233
Target Start/End: Original strand, 15636941 - 15637085
Alignment:
Q  87 aatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccattctgattggatga 186  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15636941 aatccattttgattgactcattaaaaacaaatgagtcatgatccttttttt-attggttgatataaaataaatgtgtcaaaatccattctgattggatga 15637039  T
Q  187 taagaaaacattaaatgagatgagaaatatgaagatatcacatgtac 233  Q
    ||| |||| ||||||||||||||||||||||||||| |||| |||||    
T  15637040 taataaaa-attaaatgagatgagaaatatgaagatgtcacgtgtac 15637085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 75 - 232
Target Start/End: Original strand, 15624336 - 15624491
Alignment:
Q  75 aaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccatt 174  Q
    ||||||||||| | |||||||||||||||| || ||| |||||||||||||||||         ||||||||||||||||||||||||||||||||  ||    
T  15624336 aaatgagtcatga-tccattttgattggctgatgaaaaacaaatgagtcatgatcctttttct-attggttgatataaaataaatgtgtcaaaatctttt 15624433  T
Q  175 ctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgta 232  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  15624434 ttgattggatgataagaaaacattaaatgagatgagaaatatgaagatgtcacgtgta 15624491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 15637111 - 15637257
Alignment:
Q  74 caaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccat 173  Q
    |||||||||||| | || ||| |||||||||||| ||| |||||||||||||| ||         |||||||||||||||||||||||||||||||||||    
T  15637111 caaatgagtcatga-tctattatgattggctcatgaaaaacaaatgagtcatggtcattttttt-attggttgatataaaataaatgtgtcaaaatccat 15637208  T
Q  174 tctgattggatgataagaaaacattaaatgagatgagaaatatgaagat 222  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15637209 tctgattgaatgataagaaaacattaaatgagatgagaaatatgaagat 15637257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 15614004 - 15614103
Alignment:
Q  139 attggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatg-agaaatatgaagatatcacatgtactttt 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| ||||    
T  15614004 attggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgaaaaaatatgaagatatcacgtgtattttt 15614103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 15605343 - 15605431
Alignment:
Q  149 ataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtactttt 237  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  15605343 ataaaataaatgtgtcaaaatccattttgattggatgataagaaaacattaaatgagatgagaaatatgaagatggcacatgtactttt 15605431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 15624164 - 15624298
Alignment:
Q  87 aatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccattctgattggatga 186  Q
    |||||||||| |||||||||| ||| |||||||||||||||||         |||||||||||||||||||| ||||||||||||||| |||||||||||    
T  15624164 aatccattttaattggctcattaaaaacaaatgagtcatgatcctattttt-attggttgatataaaataaacgtgtcaaaatccattttgattggatga 15624262  T
Q  187 taagaaaacattaaatgagatgagaaatatgaagat 222  Q
    |||||||||||||||||||| || ||||||||||||    
T  15624263 taagaaaacattaaatgagaggacaaatatgaagat 15624298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 15647952 - 15648086
Alignment:
Q  87 aatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccattctgattggatga 186  Q
    ||||||||||||||||||||| ||| |||||||||||||||||         |||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  15647952 aatccattttgattggctcattaaaaacaaatgagtcatgatcctattttt-attggttgatataaaataaacgtgccaaaatccattttgattggatga 15648050  T
Q  187 taagaaaacattaaatgagatgagaaatatgaagat 222  Q
    |||||||||||||||||||| || ||||||||||||    
T  15648051 taagaaaacattaaatgagaggacaaatatgaagat 15648086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 20540862 - 20540960
Alignment:
Q  139 attggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtactttt 237  Q
    ||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  20540862 attggttgatataaaataaatgtgtcataatccattttgattggaggataaaaaaacgttaaatgagataagaaatatgaagatatcagatgtactttt 20540960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 15613696 - 15613784
Alignment:
Q  149 ataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtactttt 237  Q
    ||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  15613696 ataaaataaatgtgtcaaaatccgttttgattgtatgataagaaaacattaaatgagatgagaaatatgaagatggcacatgtactttt 15613784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 16250599 - 16250407
Alignment:
Q  10 agatgaaaatgatgaaaaatgaattgtctatatatagaaagnnnnnnnnncatgtattaatttacaaatgagtcattaatccattttgattggctcataa 109  Q
    |||||||||||||||||||||| ||||||||||||| |  |         ||||||||||||||||||| |||||| | ||||||||||||||||||| |    
T  16250599 agatgaaaatgatgaaaaatgagttgtctatatatata--ggaaaaaaatcatgtattaatttacaaataagtcatga-tccattttgattggctcatga 16250503  T
Q  110 aacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagat 207  Q
    || | || ||||||||| ||         |||||||||||||||| |||||||||| |||| ||| ||||||||||||||||||||||||||||||||    
T  16250502 aaaataa-tgagtcatgctccttttttg-attggttgatataaaacaaatgtgtcataatctattttgattggatgataagaaaacattaaatgagat 16250407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 15636830 - 15636918
Alignment:
Q  149 ataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtactttt 237  Q
    |||||||||||||||| |||||| || |||||||||||||| || |||||||||||||||||||||||||||||  |||||||||||||    
T  15636830 ataaaataaatgtgtccaaatccgttttgattggatgataaaaatacattaaatgagatgagaaatatgaagatggcacatgtactttt 15636918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 15923839 - 15923927
Alignment:
Q  149 ataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtactttt 237  Q
    ||||||||||||||||||||||  || ||||||||||||||||||| |||||||||||||| ||||||||||||  |||||||||||||    
T  15923839 ataaaataaatgtgtcaaaatctgttttgattggatgataagaaaatattaaatgagatgataaatatgaagatggcacatgtactttt 15923927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 38050224 - 38050293
Alignment:
Q  139 attggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatg 208  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||    
T  38050224 attggatgatataaaataaatgtgtcataatccattttgattggatgataagaaaatattaaatgagatg 38050293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 4930294 - 4930230
Alignment:
Q  60 catgtattaatttacaaatgagtcattaatccattttgattggctcataaaacacaaatgagtcat 125  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| ||| |||||||||||||    
T  4930294 catgtattaatttacaaatgagtcatga-tccattttgattggctcatgaaaaacaaatgagtcat 4930230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 15624084 - 15624126
Alignment:
Q  180 tggatgataagaaaacattaaatgagatgagaaatatgaagat 222  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15624084 tggatgataagaaaacattaaatgagatgagaaatatgaagat 15624126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 15647872 - 15647914
Alignment:
Q  180 tggatgataagaaaacattaaatgagatgagaaatatgaagat 222  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15647872 tggatgataagaaaacattaaatgagatgagaaatatgaagat 15647914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 10895921 - 10895850
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagat 222  Q
    |||||||||| ||||  ||||||  ||||||| |||||| |||||||||||||||||||||||| |||||||    
T  10895921 aaaataaatgagtcatgatccatattgattggttgataaaaaaacattaaatgagatgagaaatttgaagat 10895850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 23689219 - 23689302
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtact 234  Q
    ||||| |||| |||| ||| || | |||||||||||||||||| |||||||||||||||  ||| ||||||| |||||||||||    
T  23689219 aaaatgaatgagtcataattcaatttgattggatgataagaaagcattaaatgagatgaagaatgtgaagatgtcacatgtact 23689302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 8362342 - 8362284
Alignment:
Q  176 tgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtact 234  Q
    ||||||||||||||||||||||||||||||||||  ||| |||||||  ||||||||||    
T  8362342 tgattggatgataagaaaacattaaatgagatgaagaatgtgaagatgccacatgtact 8362284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 15624519 - 15624572
Alignment:
Q  75 aaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatc 129  Q
    ||||||||||| | |||||| |||||||||||||||| |||||||||||||||||    
T  15624519 aaatgagtcatga-tccattatgattggctcataaaaaacaaatgagtcatgatc 15624572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 18666853 - 18666767
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtactttt 237  Q
    ||||| |||| |||| ||| || | |||||||||||||| ||| |||||||||||||||  ||| |||||||  |||||||||||||    
T  18666853 aaaatgaatgagtcataattcaatttgattggatgataaaaaagcattaaatgagatgaagaatgtgaagatgccacatgtactttt 18666767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 15923950 - 15923991
Alignment:
Q  87 aatccattttgattggctcataaaacacaaatgagtcatgat 128  Q
    ||||||||||||||||||||| ||| ||||||||||||||||    
T  15923950 aatccattttgattggctcatgaaaaacaaatgagtcatgat 15923991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 23136516 - 23136464
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatg 203  Q
    |||||||||| |||| ||| || | ||||||||||||||||||||||||||||    
T  23136516 aaaataaatgagtcataattcaatttgattggatgataagaaaacattaaatg 23136464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 15648307 - 15648357
Alignment:
Q  75 aaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatg 126  Q
    ||||||||||| | |||||| |||||||||||||||| ||||||||||||||    
T  15648307 aaatgagtcatga-tccattatgattggctcataaaaaacaaatgagtcatg 15648357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 35136758 - 35136703
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgaga 206  Q
    |||| ||||| |||| ||| || | |||||||||||||||||||||||||||||||    
T  35136758 aaaacaaatgagtcataattcaatttgattggatgataagaaaacattaaatgaga 35136703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 45251064 - 45251147
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtact 234  Q
    ||||| |||| |||| ||| || | |||||||||||||||||| |||||||||||||||  | | |||||||| ||||| ||||    
T  45251064 aaaatgaatgagtcataattcaatttgattggatgataagaaagcattaaatgagatgaagattgtgaagataccacatatact 45251147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 287413 - 287360
Alignment:
Q  75 aaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatc 129  Q
    ||||||||||| | |||||||||||||||| |||||| | |||||||||||||||    
T  287413 aaatgagtcatga-tccattttgattggctaataaaaaataaatgagtcatgatc 287360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 23161146 - 23161204
Alignment:
Q  176 tgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtact 234  Q
    |||||| ||| |||||||||||||||| | ||||||||| |||||||  ||||||||||    
T  23161146 tgattgtatgttaagaaaacattaaattatatgagaaatgtgaagatgccacatgtact 23161204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 25064002 - 25063972
Alignment:
Q  176 tgattggatgataagaaaacattaaatgaga 206  Q
    |||||||||||||||||||||||||||||||    
T  25064002 tgattggatgataagaaaacattaaatgaga 25063972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 15605122 - 15605162
Alignment:
Q  88 atccattttgattggctcataaaacacaaatgagtcatgatc 129  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  15605122 atccattttgattggctcataaaa-aaaaatgagtcatgatc 15605162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 15613474 - 15613515
Alignment:
Q  88 atccattttgattggctcataaaacacaaatgagtcatgatc 129  Q
    |||||||||||||||||||| ||| | |||||||||||||||    
T  15613474 atccattttgattggctcatgaaaaaaaaatgagtcatgatc 15613515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 17895030 - 17895067
Alignment:
Q  92 attttgattggctcataaaacacaaatgagtcatgatc 129  Q
    |||||||||||||||||||| | |||||||||||||||    
T  17895030 attttgattggctcataaaaaataaatgagtcatgatc 17895067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 60 - 233
Target Start/End: Original strand, 5750579 - 5750752
Alignment:
Q  60 catgtattaatttacaaatgagtcattaatccattttgattggctcataaaaca-caaatgagtcatgatcnnnnnnnnnattggttgatataaaataaa 158  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| ||| | |||||||||||| |||         | ||||||||||||||||||    
T  5750579 catgtattaatttacaaatgagtcatga-tccattttgattggctcatgaaaaagcaaatgagtcatcatccttttttttactggttgatataaaataaa 5750677  T
Q  159 tgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtac 233  Q
    ||||||| |||||||| |||||||||||||||||||||||| |||||||| | ||| ||||||| ||||||||||    
T  5750678 tgtgtcataatccattttgattggatgataagaaaacattagatgagatggggaatgtgaagatgtcacatgtac 5750752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 60 - 233
Target Start/End: Original strand, 5787538 - 5787711
Alignment:
Q  60 catgtattaatttacaaatgagtcattaatccattttgattggctcataaaaca-caaatgagtcatgatcnnnnnnnnnattggttgatataaaataaa 158  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| ||| | |||||||||||| |||         | ||||||||||||||||||    
T  5787538 catgtattaatttacaaatgagtcatga-tccattttgattggctcatgaaaaagcaaatgagtcatcatccttttttttactggttgatataaaataaa 5787636  T
Q  159 tgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtac 233  Q
    ||||||| |||||||| |||||||||||||||||||||||| |||||||| | ||| ||||||| ||||||||||    
T  5787637 tgtgtcataatccattttgattggatgataagaaaacattagatgagatggggaatgtgaagatgtcacatgtac 5787711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 30160593 - 30160474
Alignment:
Q  88 atccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccattctgattggatgat 187  Q
    |||||||||||||||||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  30160593 atccattttgattggctcatgaaaaacaaatgagtcatgatcctcttttt-attggttgatataaaataaatgtgtcataatccattttgattggatgat 30160495  T
Q  188 aagaaaacattaaatgagatg 208  Q
    |||||||||||||||||||||    
T  30160494 aagaaaacattaaatgagatg 30160474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 91 - 208
Target Start/End: Original strand, 20795354 - 20795470
Alignment:
Q  91 cattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccattctgattggatgataag 190  Q
    ||||||||||||||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||| |||||||| ||||||||||||| |    
T  20795354 cattttgattggctcatgaaaaacaaatgagtcatgatcctcttttt-attggttgatataaaataaatgtgtcataatccattttgattggatgatatg 20795452  T
Q  191 aaaacattaaatgagatg 208  Q
    ||||||||||||| ||||    
T  20795453 aaaacattaaatgggatg 20795470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 2766113 - 2766171
Alignment:
Q  176 tgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtact 234  Q
    ||||| ||||||||||||||||||||||||||||  ||||||||||| |||||||||||    
T  2766113 tgattagatgataagaaaacattaaatgagatgaagaatatgaagatgtcacatgtact 2766171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 37197893 - 37197829
Alignment:
Q  139 attggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatg 203  Q
    ||||||| ||| |||||||||| |||| ||| || | ||||||||||||||||||||||||||||    
T  37197893 attggttaataaaaaataaatgagtcataattcaatttgattggatgataagaaaacattaaatg 37197829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 30160649 - 30160610
Alignment:
Q  10 agatgaaaatgatgaaaaatgaattgtctatatatagaaa 49  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  30160649 agatgaaaataatgaaaaataaattgtctatatatagaaa 30160610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 6445174 - 6445211
Alignment:
Q  92 attttgattggctcataaaacacaaatgagtcatgatc 129  Q
    |||||||||||||||||||| | |||||||||||||||    
T  6445174 attttgattggctcataaaaaataaatgagtcatgatc 6445211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 20919320 - 20919268
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatg 203  Q
    |||||||||| |||| ||| || | |||||||||| |||||||||||||||||    
T  20919320 aaaataaatgagtcataattcaatttgattggatggtaagaaaacattaaatg 20919268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 20928282 - 20928230
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatg 203  Q
    |||||||||| |||| ||| || | |||||||||| |||||||||||||||||    
T  20928282 aaaataaatgagtcataattcaatttgattggatggtaagaaaacattaaatg 20928230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 60 - 222
Target Start/End: Complemental strand, 501242 - 501081
Alignment:
Q  60 catgtattaatttacaaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaat 159  Q
    |||||||||||||||||||||||||| | || |||||||||||||||| ||| |||||||||||||||||         || | ||||||||||||||||    
T  501242 catgtattaatttacaaatgagtcatga-tctattttgattggctcatgaaaaacaaatgagtcatgatccttttttttatcgattgatataaaataaat 501144  T
Q  160 gtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagat 222  Q
    |||||| |||| ||| ||||||||||||||||||  ||||||||| |||||||||||||||||    
T  501143 gtgtcataatcaattttgattggatgataagaaagtattaaatgatatgagaaatatgaagat 501081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 237
Target Start/End: Complemental strand, 36648101 - 36647926
Alignment:
Q  60 catgtattaatttacaaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaat 159  Q
    |||||||||||||||||||||||||| | |||||||||||||| ||||  || ||||||||| | || ||         ||||||||||||||||||||     
T  36648101 catgtattaatttacaaatgagtcatga-tccattttgattggttcatgtaaaacaaatgagccgtggtccttctttt-attggttgatataaaataaac 36648004  T
Q  160 gtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtactttt 237  Q
    ||| || |||| ||| ||||| || |||||||||||||||||||||||   |||| |||||||||||| |||||||||    
T  36648003 gtgacataatctattttgattagaagataagaaaacattaaatgagatagaaaatgtgaagatatcacgtgtactttt 36647926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 27588675 - 27588592
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtact 234  Q
    |||||||||| |||| ||| || | ||||||||||||||||||| ||||||||||||||  ||| |||||||  ||||||||||    
T  27588675 aaaataaatgagtcataattcaatttgattggatgataagaaaatattaaatgagatgaagaatgtgaagatgccacatgtact 27588592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 9663083 - 9663135
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatg 203  Q
    |||||||||| |||| ||| || | ||||||||||||||||||||||||||||    
T  9663083 aaaataaatgagtcataattcaatttgattggatgataagaaaacattaaatg 9663135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 60 - 222
Target Start/End: Original strand, 34269 - 34429
Alignment:
Q  60 catgtattaatttacaaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaat 159  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||| |||         |||||||||||||||||||||    
T  34269 catgtattaatttacaaatgagtcat-aatccattttgattggctcatgaaaaacaaatgtgtcataatccttttttt-attggttgatataaaataaat 34366  T
Q  160 gtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagat 222  Q
    |||||| |||| ||| ||||| ||||||| |||| |||||||||| |||||||||||||||||    
T  34367 gtgtcataatcaattttgattagatgatatgaaagcattaaatgatatgagaaatatgaagat 34429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 33452249 - 33452450
Alignment:
Q  10 agatgaaaatgatgaaaaatgaattgtctatatatagaaagnnnnnnnnncatgtattaatttacaaatgagtcattaatccattttgattggctcataa 109  Q
    |||||||||||||||||||  |||||||||||||||| |||         ||| | |||||||||||||||||||| | ||||||||||||||||||| |    
T  33452249 agatgaaaatgatgaaaaacaaattgtctatatataggaagaaaaaaaa-cattttttaatttacaaatgagtcatga-tccattttgattggctcatga 33452346  T
Q  110 aacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatga 209  Q
    || ||||||| ||||| |||         ||||||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||||    
T  33452347 aaaacaaatgtgtcataatccttttttt-attggttgatataaaataaatgtttcataattcattttgattggatgataagaaaacattaaatgagatga 33452445  T
Q  210 gaaat 214  Q
    |||||    
T  33452446 gaaat 33452450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 88 - 208
Target Start/End: Original strand, 21992612 - 21992731
Alignment:
Q  88 atccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccattctgattggatgat 187  Q
    |||||||||||||||||||  ||| |||||||||||||||||         ||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  21992612 atccattttgattggctcaagaaaaacaaatgagtcatgatcctcttttg-attggttgatataaaataaatgtgtcataatccattttgattggatgat 21992710  T
Q  188 aagaaaacattaaatgagatg 208  Q
    |||||||||||||||||||||    
T  21992711 aagaaaacattaaatgagatg 21992731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 13705427 - 13705623
Alignment:
Q  10 agatgaaaatgatgaaaaatgaattgtctatatatagaaagnnnnnnnnncatgtattaatttacaaatgagtcattaatccattttgattggctcataa 109  Q
    |||||||||||||||||||  |||||||||||| ||||||          ||| | |||||||||||||||||||| | ||||||||||||||||||| |    
T  13705427 agatgaaaatgatgaaaaacaaattgtctatatctagaaa----aaaaaacattttttaatttacaaatgagtcatga-tccattttgattggctcatga 13705521  T
Q  110 aacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatga 209  Q
    || ||||||| ||||| |||         ||||||||||||||||||||||| ||||  | |||| ||||||||||||||||||||||||||||||||||    
T  13705522 aaaacaaatgtgtcataatccttttttt-attggttgatataaaataaatgtttcaa--ttcattttgattggatgataagaaaacattaaatgagatga 13705618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 15654152 - 15654054
Alignment:
Q  139 attggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtactttt 237  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||||||||| |||||||||||| |||  |||||||||    
T  15654152 attggttgatataaaataaatgtgtcataatccattttgattggatgataagaaagtattaaatgagatgataaatatgaagatgtcatgtgtactttt 15654054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 15664105 - 15664007
Alignment:
Q  139 attggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtactttt 237  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||||||||| |||||||||||| |||  |||||||||    
T  15664105 attggttgatataaaataaatgtgtcataatccattttgattggatgataagaaagtattaaatgagatgataaatatgaagatgtcatgtgtactttt 15664007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 4856970 - 4857034
Alignment:
Q  139 attggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatg 203  Q
    ||||||| ||| |||||||||| |||| ||| || | ||||||||||||||||||||||||||||    
T  4856970 attggttaataaaaaataaatgagtcataattcaatttgattggatgataagaaaacattaaatg 4857034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 27434766 - 27434709
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatg 208  Q
    |||||||||| |||| ||| || | | |||||||||||||||||||||||||||||||    
T  27434766 aaaataaatgagtcataattcaatttaattggatgataagaaaacattaaatgagatg 27434709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 15654262 - 15654195
Alignment:
Q  61 atgtattaatttacaaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatc 129  Q
    |||||||||||||||||||||||| |  | ||||||||||||  ||| ||| |||||||||||||||||    
T  15654262 atgtattaatttacaaatgagtca-tgtttcattttgattggaacatgaaaaacaaatgagtcatgatc 15654195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 15664211 - 15664144
Alignment:
Q  61 atgtattaatttacaaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatc 129  Q
    |||||||||||||||||||||||| |  | ||||||||||||  ||| ||| |||||||||||||||||    
T  15664211 atgtattaatttacaaatgagtca-tgtttcattttgattggaacatgaaaaacaaatgagtcatgatc 15664144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 4749557 - 4749520
Alignment:
Q  92 attttgattggctcataaaacacaaatgagtcatgatc 129  Q
    |||||||||||||||||||| | |||||||||||||||    
T  4749557 attttgattggctcataaaaaataaatgagtcatgatc 4749520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 32681561 - 32681524
Alignment:
Q  12 atgaaaatgatgaaaaatgaattgtctatatatagaaa 49  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  32681561 atgaaaataatgaaaaataaattgtctatatatagaaa 32681524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 11550312 - 11550248
Alignment:
Q  139 attggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatg 203  Q
    ||||||| ||| |||||||||| |||| |||  | | | ||||||||||||||||||||||||||    
T  11550312 attggttaataaaaaataaatgagtcataatttaatttaattggatgataagaaaacattaaatg 11550248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 33010492 - 33010456
Alignment:
Q  191 aaaacattaaatgagatgagaaatatgaagatatcac 227  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  33010492 aaaacattaaatgagatgagcaatatgaagatgtcac 33010456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 60 - 207
Target Start/End: Original strand, 17461900 - 17462045
Alignment:
Q  60 catgtattaatttacaaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaat 159  Q
    ||||||||||||||||||||| || || ||||||||||||||| |||||||||||||||||||||| |||         |||||||||||||||||||||    
T  17461900 catgtattaatttacaaatgactcgttgatccattttgattggttcataaaacacaaatgagtcataatc--ttcttttattggttgatataaaataaat 17461997  T
Q  160 gtgtcaaaatccattctgattggatgataagaaaacattaaatgagat 207  Q
    || ||| |||||||| ||||||| |||||| |||||| ||||||||||    
T  17461998 gtatcataatccattttgattggttgataaaaaaacactaaatgagat 17462045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 37069615 - 37069806
Alignment:
Q  10 agatgaaaatgatgaaaaatgaattgtctatatatagaaagnnnnnnnnncatgtattaatttacaaatgagtcattaatccattttgattggctcataa 109  Q
    |||||||||||||||||||  |||||||||||||||||||          ||| | |||||||||||||||||||| | ||||||||||||||||||  |    
T  37069615 agatgaaaatgatgaaaaacaaattgtctatatatagaaa----aaaaaacattttttaatttacaaatgagtcatga-tccattttgattggctcacga 37069709  T
Q  110 aacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatga 209  Q
    || ||||||| ||||| |||         ||||||||||||||||||||||| ||||  | |||| ||||||||||||||||||||||||||||||||||    
T  37069710 aaaacaaatgtgtcataatccttttttt-attggttgatataaaataaatgtttcaa--ttcattttgattggatgataagaaaacattaaatgagatga 37069806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 13923218 - 13923330
Alignment:
Q  11 gatgaaaatgatgaaaaatgaattgtctatatatagaaagnnnnnnnnncatgtattaatttacaaatgagtcattaatccattttgattggctcataaa 110  Q
    ||||||||||||||||||  |||||||||||||||| ||          |||||||||||||||||||||||||| | ||||||||||||||||||| ||    
T  13923218 gatgaaaatgatgaaaaacaaattgtctatatataggaa-aaaaaaaaacatgtattaatttacaaatgagtcatga-tccattttgattggctcatgaa 13923315  T
Q  111 acacaaatgagtcat 125  Q
    | |||||||||||||    
T  13923316 aaacaaatgagtcat 13923330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 24107 - 24160
Alignment:
Q  75 aaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatc 129  Q
    ||||||||||||| |||||||||||||||| |||||| | |||||||||||||||    
T  24107 aaatgagtcatta-tccattttgattggctaataaaaaataaatgagtcatgatc 24160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 18066791 - 18066848
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatg 208  Q
    |||||||||| |||| ||| || | | |||||||||||||||||||||||||||||||    
T  18066791 aaaataaatgagtcataattcaatttaattggatgataagaaaacattaaatgagatg 18066848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 111 - 236
Target Start/End: Complemental strand, 11127866 - 11127741
Alignment:
Q  111 acacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgag 210  Q
    |||||||||||||||||||         ||||||||||||||||||||||||||| |||||||| ||||||| |||||| |||| ||||||||||||||     
T  11127866 acacaaatgagtcatgatctttttttttattggttgatataaaataaatgtgtcataatccattttgattggttgataataaaatattaaatgagatgaa 11127767  T
Q  211 aaatatgaagatatcacatgtacttt 236  Q
    ||||||||||||  ||| ||||||||    
T  11127766 aaatatgaagatgccacgtgtacttt 11127741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 20103562 - 20103505
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatg 208  Q
    |||||||||| |||| ||| || | |||||||||||||||||||||||||||||||||    
T  20103562 aaaataaatgagtcataattcaatttgattggatgataagaaaacattaaatgagatg 20103505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 21119910 - 21119825
Alignment:
Q  149 ataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtact 234  Q
    ||||||| |||| |||| ||| || | |||||||||||||||||| |||||||||||||||  |||  ||||||| ||||||||||    
T  21119910 ataaaatgaatgagtcataattcaatttgattggatgataagaaagcattaaatgagatgaagaatgcgaagataccacatgtact 21119825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 24972286 - 24972344
Alignment:
Q  176 tgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtact 234  Q
    |||||||||||||||||| |||||||||||||||  ||| |||||||  ||||||||||    
T  24972286 tgattggatgataagaaagcattaaatgagatgaagaatgtgaagatgccacatgtact 24972344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 9274 - 9155
Alignment:
Q  88 atccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccattctgattggatgat 187  Q
    |||||||||||||||||||| ||| | |||||||||||||||         ||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  9274 atccattttgattggctcatgaaaaataaatgagtcatgatcctcttttt-attggttgatataaaataaatgtgttataatccattttgattggatgat 9176  T
Q  188 aagaaaacattaaatgagatg 208  Q
    |||||||||||||||| ||||    
T  9175 aagaaaacattaaatgggatg 9155  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 19095474 - 19095355
Alignment:
Q  88 atccattttgattggctcataaaacacaaatgagtcatgatcnnnnnnnnnattggttgatataaaataaatgtgtcaaaatccattctgattggatgat 187  Q
    |||||||||||||||||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||| |||||||| | |||| |||||    
T  19095474 atccattttgattggctcatgaaaaacaaatgagtcatgatcctcttttt-attggttgatataaaataaatgtgtcataatccatttttattgaatgat 19095376  T
Q  188 aagaaaacattaaatgagatg 208  Q
    |||||||||||||||| ||||    
T  19095375 aagaaaacattaaatgggatg 19095355  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 22544225 - 22544308
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtact 234  Q
    ||||| |||| |||| ||| || | |||||||||||||||||| |||||||||||||||  ||| ||||||| |||||||||||    
T  22544225 aaaatgaatgagtcataattcaatttgattggatgataagaaagcattaaatgagatgaagaatgtgaagatgtcacatgtact 22544308  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 15535296 - 15535379
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtact 234  Q
    ||||| |||| |||| ||| || | ||||||||||||||||||||||||||||| ||||  ||| |||||||  ||||||||||    
T  15535296 aaaatgaatgagtcataattcaatttgattggatgataagaaaacattaaatgaaatgaagaatgtgaagatgccacatgtact 15535379  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 237
Target Start/End: Original strand, 8314046 - 8314132
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtactttt 237  Q
    |||||||||| ||||  ||| ||| ||||||| |||||| ||||||||||||||||  |||||| ||||||| |||  |||||||||    
T  8314046 aaaataaatgagtcatgatctattttgattggttgataaaaaaacattaaatgagaaaagaaatttgaagatgtcatgtgtactttt 8314132  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 45914996 - 45914950
Alignment:
Q  176 tgattggatgataagaaaacattaaatgagatgagaaatatgaagat 222  Q
    ||||||||||||||||||||||||||||||||||  ||| |||||||    
T  45914996 tgattggatgataagaaaacattaaatgagatgaagaatgtgaagat 45914950  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 8106933 - 8106998
Alignment:
Q  139 attggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatga 204  Q
    |||||||| | ||||||| ||| |||| |||| ||| ||||||||||||||  |||||||||||||    
T  8106933 attggttgttgtaaaatagatgagtcataatcaattttgattggatgataaagaaacattaaatga 8106998  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 8111579 - 8111644
Alignment:
Q  139 attggttgatataaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatga 204  Q
    |||||||| | ||||||| ||| |||| |||| ||| ||||||||||||||  |||||||||||||    
T  8111579 attggttgttgtaaaatagatgagtcataatcaattttgattggatgataaagaaacattaaatga 8111644  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 7946573 - 7946631
Alignment:
Q  176 tgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtact 234  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||    
T  7946573 tgattggatgataagaaaacattaaatgagatgaagaatatgaagatgtcacatgtact 7946631  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 29494038 - 29493955
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgtact 234  Q
    ||||| |||| |||| ||| || | |||||||||||||||||| |||||||| ||||||  ||| |||||||| ||||||||||    
T  29494038 aaaatgaatgagtcataattcaatttgattggatgataagaaagcattaaataagatgaagaatgtgaagataccacatgtact 29493955  T

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Target: scaffold0155 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 26695 - 26639
Alignment:
Q  176 tgattggatgataagaaaacattaaatgagatgagaaatatgaagatatcacatgta 232  Q
    ||||||||||||||||||||||||||||||||||  ||| |||||||  ||||||||    
T  26695 tgattggatgataagaaaacattaaatgagatgaagaatgtgaagatgccacatgta 26639  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 52597 - 52654
Alignment:
Q  151 aaaataaatgtgtcaaaatccattctgattggatgataagaaaacattaaatgagatg 208  Q
    |||||||||| |||| ||| || | | |||||||||||||||||||||||||||||||    
T  52597 aaaataaatgagtcataattcaatttaattggatgataagaaaacattaaatgagatg 52654  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 101188 - 101135
Alignment:
Q  75 aaatgagtcattaatccattttgattggctcataaaacacaaatgagtcatgatc 129  Q
    ||||||||||| | |||||||||||||||| |||||| | |||||||||||||||    
T  101188 aaatgagtcatga-tccattttgattggctaataaaaaataaatgagtcatgatc 101135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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