View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_high_66 (Length: 250)
Name: NF17288_high_66
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_66 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34980501 - 34980721
Alignment:
| Q |
1 |
aaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34980501 |
aaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttgatttgtgtcgaaatc |
34980600 |
T |
|
| Q |
101 |
aaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttga |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34980601 |
aaaatccaatgtcaacaaaggaagtttttggacaaggttttccgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttga |
34980700 |
T |
|
| Q |
201 |
attacttatggatgtggcaag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
34980701 |
attacttatggatgtggcaag |
34980721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 34992903 - 34993115
Alignment:
| Q |
1 |
aaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatc |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| | |
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| T |
34992903 |
aaacaatttagtcaggttgatgcatcattaatggagcttgttaagatggttgaagttggagatcttcaaacactgcctagttttgattcgtgtcgaatcc |
34993002 |
T |
|
| Q |
101 |
aaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttga |
200 |
Q |
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| T |
34993003 |
aagatccaatgtcaacaaaggacgtttttggacaaggtttgcagattgaaggttcacgggatatggcattgattaagataagtccaactaaactagttga |
34993102 |
T |
|
| Q |
201 |
attacttatggat |
213 |
Q |
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| T |
34993103 |
agtacttatggat |
34993115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 37 - 217
Target Start/End: Original strand, 34984984 - 34985164
Alignment:
| Q |
37 |
attgttaagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaag |
136 |
Q |
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||||||||| |||||||||||||||| ||| ||||| ||||||||||||||| ||||||||| |||||| |||||| |||| ||||||||||| |||| |
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| T |
34984984 |
attgttaagttggttgaagttggagagcttcaaactttacctagttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtttttgaacaag |
34985083 |
T |
|
| Q |
137 |
gttttccgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgtgg |
217 |
Q |
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| T |
34985084 |
gtttgcagattgaagcttctcgggacaaggcattgattaagataagtccaactaaactagttgaattacttatggatgtgg |
34985164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 47 - 217
Target Start/End: Complemental strand, 27542652 - 27542482
Alignment:
| Q |
47 |
tggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgat |
146 |
Q |
| |
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|||||||||||||||| || ||||| ||||||||||||||| ||||||||| ||||||||||||| |||| | |||||||||| |||||||| | ||| |
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| T |
27542652 |
tggttgaagttggagaattttaaactttacctagttttgatttgtgtcgaaaccaaaatccaatgtacacaatgaaagtttttggacaaggtttgcagat |
27542553 |
T |
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| Q |
147 |
tgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgtgg |
217 |
Q |
| |
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|||||||| |||| |||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
27542552 |
tgaagcttttcggaacatggcattgattaagataagtccaactaaactagttgaaatacttatggatgtgg |
27542482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 27581589 - 27581375
Alignment:
| Q |
1 |
aaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatc |
100 |
Q |
| |
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||||||||| ||| |||||||||| | ||||| | ||| ||| | |||||||||||||||| ||| ||||| ||||||||||||||| ||| ||||| |
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| T |
27581589 |
aaacaatttggtcgggttgatgcaacattaatggagattattaggttggttgaagttggagagcttcaaactttacctagttttgatttgtga--aaatc |
27581492 |
T |
|
| Q |
101 |
aaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttga |
200 |
Q |
| |
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|||||||||||| |||| |||||||| ||| |||||||| ||||||||| || ||||||||| |||| ||||||||| ||||||||||||||||| |
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| T |
27581491 |
aaaatccaatgtacacaatggaagtttctggacaaggtttatagattgaagcctcgtgggacatggcattggttaagataattccaactaaactagttga |
27581392 |
T |
|
| Q |
201 |
attacttatggatgtgg |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
27581391 |
attacttatggatgtgg |
27581375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 27583015 - 27583233
Alignment:
| Q |
1 |
aaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatc |
100 |
Q |
| |
|
||||||||| ||| |||||||||| | | ||| | ||||||| | |||||| ||||||||| ||| ||||| ||||||||||| ||| ||||||||| | |
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| T |
27583015 |
aaacaatttggtcgggttgatgcaacatcaatggagattgttaggttggttggagttggagagcttcaaactttacctagttttaatttgtgtcgaaacc |
27583114 |
T |
|
| Q |
101 |
aaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacatggaa--ttgattaagataagaccaactaaactagtt |
198 |
Q |
| |
|
|||||||||||| |||| |||| ||||||| |||||||| ||||||||||||||| ||||||| | |||||||| ||| | |||||||||||| | |
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| T |
27583115 |
aaaatccaatgtacacaatggaaatttttggacaaggtttgttgattgaagcttctcgagacatggcatgttgattaatatatgttcaactaaactagat |
27583214 |
T |
|
| Q |
199 |
gaattacttatggatgtgg |
217 |
Q |
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||||||||||||||||||| |
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| T |
27583215 |
gaattacttatggatgtgg |
27583233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 27543691 - 27543854
Alignment:
| Q |
1 |
aaacaatttagtcaggttgatgcatcgttaattgcaattgttaagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatc |
100 |
Q |
| |
|
||||||||| || |||||||||| | ||||| | ||||||| | || ||| ||||||||| ||| ||||| ||||||||||||||| ||||||||| | |
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| T |
27543691 |
aaacaatttggttgggttgatgcaacattaatggagattgttaggttgcttggagttggagagcttcaaactttacctagttttgatttgtgtcgaaacc |
27543790 |
T |
|
| Q |
101 |
aaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagcttctcgggacat |
164 |
Q |
| |
|
|||||||||||| |||| |||||||||||| || ||||| | |||||||||||||| |||||| |
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|
| T |
27543791 |
aaaatccaatgtacacaatggaagtttttggacatggtttgcagattgaagcttctcaggacat |
27543854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 27543859 - 27543892
Alignment:
| Q |
184 |
ccaactaaactagttgaattacttatggatgtgg |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
27543859 |
ccaactaaactagttgaattacttatggatgtgg |
27543892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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