View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_high_7 (Length: 622)
Name: NF17288_high_7
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 10 - 622
Target Start/End: Complemental strand, 35089447 - 35088834
Alignment:
| Q |
10 |
aagaatattatacactataccctcttaaagaaaggttgaatatttgaagtgagactaaaaagttgagcaccaaaaaagatagaagatatgaaaatattat |
109 |
Q |
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| T |
35089447 |
aagaatattatacacca--ccctcttaaagaaaggttgaatatttgaagtgagactaaaaagttgagcaccaaaaaagatagaagatatgaaaatattat |
35089350 |
T |
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| Q |
110 |
aggaacattcaagagcaagagggtgaaagagggtgtagaaagctaagaagatccaatagagnnnnnnngatagattcttttcaatcaaacaaaggaaaaa |
209 |
Q |
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| T |
35089349 |
aggaacattcaagagcaagagggtgaaagagggtgtagaaagctaagaagatccaatagagaaaaaaagatagattcttttcaatcaaacaaaggaaaaa |
35089250 |
T |
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| Q |
210 |
agatggatataactatttcactttgtcgtttcttcatgaggaagcaacaataaaagcaaatggcattacacacatagtcacatacatacataaatgtata |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35089249 |
agatggatataactatttcactttgtcgtttcttcatgaggaagcaacaataaaagcaaatggcattacacacatagtcacatacatacataaatgtata |
35089150 |
T |
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| Q |
310 |
caaaattgtgtattgagagagtagaagtgagttcaaaaggaagaagaagaaattttag---tannnnnnnngttaagagttaagataataataaggttga |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
35089149 |
caaaattgtgtattgagagagtagaagtgagttcaaaaggaagaagaagaaattttagtttttttttttttgttaagagttaagataataataaggttga |
35089050 |
T |
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| Q |
407 |
tattagaatgtgacactaggtggtagtaggtactaggttgtagctataagcctatgactaacgacaaagtgttgtccttaattaattgtagtattcaaat |
506 |
Q |
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| T |
35089049 |
tattagaatgtgacactaggtggtagtaggtactaggttgtagctataagcctatgactaacgacaaagtgttgtccttaattaattgtagtattcaaat |
35088950 |
T |
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| Q |
507 |
gagtttaaattaggatatggttcaaaaattagtaaaatatacacaaacttttttggggtaaagtatgagtttattattcatatattgatctaagaaatga |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35088949 |
gagtttaaattaggatatggttcaaaaattagtaaaatatacacaaacttttttggggtaaagtatgagtttattattcatatattgatctaagaaatga |
35088850 |
T |
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| Q |
607 |
aggtaatgtcgtgcaa |
622 |
Q |
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|||||||||||||||| |
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| T |
35088849 |
aggtaatgtcgtgcaa |
35088834 |
T |
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