View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17288_high_76 (Length: 216)
Name: NF17288_high_76
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_76 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 47720419 - 47720241
Alignment:
| Q |
19 |
aataataacaagaacaacaagctcaagatatcaacaacaataagaataaactcatattaaaaataaaaagaataacatcaatgatagttcagagatctta |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47720419 |
aataataacaagaacaacaagctcaaaatatcaacaacaataagaataaactcatattaacaataaaaagaataacatcaatgatagttcagagatctta |
47720320 |
T |
|
| Q |
119 |
ttggaagaggttaactgacggtcgctaaatgttaaccaattgttattatatttttaggaagagaaatcttaatcagttt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47720319 |
ttggaagaggttaactgacggtcgctaaatgttaaccaattgttattatatttttaggaagagaaatcttaatcagttt |
47720241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 47727411 - 47727233
Alignment:
| Q |
19 |
aataataacaagaacaacaagctcaagatatcaacaacaataagaataaactcatattaaaaataaaaagaataacatcaatgatagttcagagatctta |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47727411 |
aataataacaagaacaacaagctcaaaatatcaacaacaataagaataaactcatattaacaataaaaagaataacatcaatgatagttcagagatctta |
47727312 |
T |
|
| Q |
119 |
ttggaagaggttaactgacggtcgctaaatgttaaccaattgttattatatttttaggaagagaaatcttaatcagttt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47727311 |
ttggaagaggttaactgacggtcgctaaatgttaaccaattgttattatatttttaggaagagaaatcttaatcagttt |
47727233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 47753340 - 47753258
Alignment:
| Q |
19 |
aataataacaagaacaacaagctcaagatatcaacaacaataagaataaactcatattaaaaataaaaagaataacatcaatg |
101 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| |||| ||||| |
|
|
| T |
47753340 |
aataataacaagaacaacaagctcaaaatatcaacaacaataagaataaactcatattaataataagaagaacaacaacaatg |
47753258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University