View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_high_80 (Length: 207)
Name: NF17288_high_80
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_high_80 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 5e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 10544975 - 10544795
Alignment:
| Q |
15 |
aatacccattgcaagtattgatgataggttgaggagcatcattttgttgacacatgaaccatggaacaccgatattttgtgctaaagccatttgagcagc |
114 |
Q |
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| T |
10544975 |
aatacccattgcaagtattgatgataggttgaggagcatcattttgttgacacatgaaccatggaacaccgatattttgtgctaaagccatttgagcagc |
10544876 |
T |
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| Q |
115 |
ccatttaatatatgctttccctggttctttgaaattccacatgatatctccatattcattctcaatttgagctagaataat |
195 |
Q |
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| T |
10544875 |
ccatttaatatatgctttccctggttctttgaaattccacatgatatctccatattcattctcaatttgagctagaataat |
10544795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 9643029 - 9642849
Alignment:
| Q |
15 |
aatacccattgcaagtattgatgataggttgaggagcatcattttgttgacacatgaaccatggaacaccgatattttgtgctaaagccatttgagcagc |
114 |
Q |
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| T |
9643029 |
aatatccattgcaagtattgatgataggttgaggagcatcttgttgttgacacatgatccatggaacaccaatgttttgtgctagagccatctgagcagc |
9642930 |
T |
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| Q |
115 |
ccatttaatatatgctttccctggttctttgaaattccacatgatatctccatattcattctcaatttgagctagaataat |
195 |
Q |
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| T |
9642929 |
ccattgaacatatgccttcccagcatctttgtaattccacatgatgtccccatattcattctcaatttgagctagaataat |
9642849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 65 - 195
Target Start/End: Complemental strand, 278762 - 278632
Alignment:
| Q |
65 |
cacatgaaccatggaacaccgatattttgtgctaaagccatttgagcagcccatttaatatatgctttccctggttctttgaaattccacatgatatctc |
164 |
Q |
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||||||| |||||| ||||| |||||||| ||||||||||||| ||| ||||||||| |||| ||||| | |||| ||| | |||| ||||| |
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| T |
278762 |
cacatgatccatgggacaccaatattttgagctaaagccatttcggcacaccatttaatgtatgaattcccagcttctccataatgacttatgacatctc |
278663 |
T |
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| Q |
165 |
catattcattctcaatttgagctagaataat |
195 |
Q |
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|||||||||||||||||||||| | |||||| |
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| T |
278662 |
catattcattctcaatttgagccaaaataat |
278632 |
T |
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