View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17288_low_10 (Length: 583)

Name: NF17288_low_10
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17288_low_10
NF17288_low_10
[»] chr3 (22 HSPs)
chr3 (311-539)||(39301448-39301676)
chr3 (175-329)||(39299912-39300066)
chr3 (1-110)||(39299794-39299903)
chr3 (17-143)||(10839399-10839522)
chr3 (1-144)||(51336180-51336319)
chr3 (17-128)||(19649406-19649515)
chr3 (15-144)||(48206838-48206963)
chr3 (12-143)||(1781743-1781871)
chr3 (75-128)||(3178744-3178797)
chr3 (12-126)||(33103725-33103835)
chr3 (13-144)||(19644345-19644474)
chr3 (13-128)||(5391441-5391551)
chr3 (16-143)||(6280378-6280501)
chr3 (86-128)||(13856151-13856193)
chr3 (17-128)||(54546891-54546998)
chr3 (85-138)||(39352245-39352298)
chr3 (12-143)||(43347355-43347481)
chr3 (17-142)||(8926752-8926874)
chr3 (86-128)||(8950538-8950580)
chr3 (86-143)||(22845381-22845438)
chr3 (12-126)||(36539613-36539724)
chr3 (80-128)||(47889772-47889820)
[»] chr6 (5 HSPs)
chr6 (1-143)||(28750669-28750808)
chr6 (86-143)||(27863751-27863808)
chr6 (54-144)||(13103136-13103223)
chr6 (86-128)||(14309832-14309874)
chr6 (86-143)||(34103737-34103794)
[»] chr2 (9 HSPs)
chr2 (17-143)||(41674725-41674849)
chr2 (26-126)||(23685406-23685503)
chr2 (13-128)||(33009654-33009767)
chr2 (16-143)||(14539723-14539847)
chr2 (12-143)||(28321722-28321850)
chr2 (13-128)||(6318492-6318605)
chr2 (86-128)||(29846494-29846536)
chr2 (56-126)||(25665249-25665316)
chr2 (86-126)||(40277324-40277364)
[»] chr1 (16 HSPs)
chr1 (54-144)||(30745367-30745454)
chr1 (54-144)||(30766818-30766905)
chr1 (46-144)||(44462496-44462594)
chr1 (22-143)||(26835329-26835447)
chr1 (13-78)||(44107469-44107534)
chr1 (91-143)||(37189697-37189749)
chr1 (86-128)||(23908337-23908379)
chr1 (12-143)||(10907667-10907794)
chr1 (86-143)||(13131948-13132005)
chr1 (12-127)||(5558291-5558402)
chr1 (15-78)||(45968652-45968715)
chr1 (86-128)||(3346838-3346880)
chr1 (86-128)||(10156050-10156092)
chr1 (85-143)||(42456623-42456681)
chr1 (17-77)||(1106762-1106822)
chr1 (29-143)||(38859849-38859960)
[»] chr4 (13 HSPs)
chr4 (12-140)||(50328777-50328902)
chr4 (26-144)||(35322722-35322837)
chr4 (12-127)||(322584-322696)
chr4 (17-128)||(11054439-11054550)
chr4 (17-143)||(12792250-12792373)
chr4 (80-126)||(5780790-5780836)
chr4 (86-143)||(47084064-47084121)
chr4 (26-143)||(17888569-17888683)
chr4 (86-128)||(16338247-16338289)
chr4 (86-128)||(52632570-52632612)
chr4 (86-143)||(9742552-9742609)
chr4 (98-143)||(10094412-10094457)
chr4 (45-143)||(19124757-19124852)
[»] chr5 (11 HSPs)
chr5 (1-143)||(42119592-42119731)
chr5 (1-143)||(11856265-11856404)
chr5 (14-143)||(36769093-36769218)
chr5 (80-143)||(29790238-29790301)
chr5 (80-143)||(15475413-15475476)
chr5 (86-128)||(9738017-9738059)
chr5 (86-128)||(33271304-33271346)
chr5 (26-126)||(25560363-25560460)
chr5 (86-143)||(614411-614468)
chr5 (13-128)||(8456997-8457109)
chr5 (17-143)||(29491433-29491554)
[»] chr8 (6 HSPs)
chr8 (19-144)||(10112035-10112157)
chr8 (12-120)||(34697431-34697536)
chr8 (88-143)||(16591394-16591449)
chr8 (86-128)||(21525410-21525452)
chr8 (86-128)||(42072480-42072522)
chr8 (1-62)||(16591440-16591501)
[»] chr7 (9 HSPs)
chr7 (12-143)||(17303133-17303262)
chr7 (13-128)||(19334594-19334706)
chr7 (15-143)||(10334162-10334287)
chr7 (86-143)||(15017825-15017882)
chr7 (17-128)||(33057691-33057798)
chr7 (86-128)||(29555973-29556015)
chr7 (86-128)||(29981147-29981189)
chr7 (86-128)||(32876564-32876606)
chr7 (86-140)||(44164765-44164819)
[»] scaffold0086 (1 HSPs)
scaffold0086 (86-143)||(20850-20907)
[»] scaffold0079 (1 HSPs)
scaffold0079 (86-128)||(54571-54613)
[»] scaffold0045 (1 HSPs)
scaffold0045 (86-143)||(34471-34528)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 311 - 539
Target Start/End: Original strand, 39301448 - 39301676
Alignment:
Q  311 tgttcctattcaacattttttgctctatatgttgctaactcagaaggtaccaatgttacttattttacgtaaaattatttggatggtattttaaagaaaa 410  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39301448 tgttcctattcagcattttttgctctatatgttgctaactcagaaggtaccaatgttacttattttacgtaaaattatttggatggtattttaaagaaaa 39301547  T
Q  411 ctatttaaacaaattaaattgtttccttcgttcttcaattgtaaatttttgtgtgctctaatagtcgagagtttctattttgtgaattgtttaatggtgg 510  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39301548 ctatttaaacaaattaaattgtttccttcgttcttctattgtaaatttttgtgtgctctaatagtcgagagtttctattttgtgaattgtttaatggtgg 39301647  T
Q  511 tgaatttacattgataattttaatagaca 539  Q
    ||||||||| |||||||||||||||||||    
T  39301648 tgaatttacgttgataattttaatagaca 39301676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 175 - 329
Target Start/End: Original strand, 39299912 - 39300066
Alignment:
Q  175 agctcgtcgggccttggatccaccactgcatgtgaggtccatttcggcgagtaccggtgtttttgcagttcggtgttttttaggttagatttcgttcact 274  Q
    |||||||||||||||| |||  ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||    
T  39299912 agctcgtcgggccttgaatctgccactgcatgtgaagtccatttcggcgagtaccagtgtttttgcagttcggtgttttttagatcagatttcgttcact 39300011  T
Q  275 tccacttgcaatttctttcttatttctacttggttttgttcctattcaacatttt 329  Q
    ||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  39300012 tccccttgcgatttctttcttatttctacttggttttgttcctattcaacgtttt 39300066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 39299794 - 39299903
Alignment:
Q  1 attataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtcca 100  Q
    |||||||||||||| ||||| |||||||||||| |||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  39299794 attataaaacatggacaaaacaaatttgcaacatatttatcagggtttacatgagaaattgcacgtaaacaattaaaataaaaattaaagaaattgtcca 39299893  T
Q  101 atttataaag 110  Q
    ||||||||||    
T  39299894 atttataaag 39299903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 10839522 - 10839399
Alignment:
Q  17 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttat 116  Q
    |||| ||||||||||||||| |||  |  |||| || |||||||||||| ||| ||||||||   ||  ||||||||||| |||||||||| || |||||    
T  10839522 aaaaaaaatttgcaacacatgtataggtgtttacataagaaattgcaagcaaataatcaaaa---aatctaaagaaattgcccaatttatagaggtttat 10839426  T
Q  117 ataagaaattcagataaatttacataa 143  Q
    |||||||||||||| ||||||||||||    
T  10839425 ataagaaattcagagaaatttacataa 10839399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 51336180 - 51336319
Alignment:
Q  1 attataaaacatgggcaaaataaatttgcaacacatttatcagga-tttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtcc 99  Q
    |||||||||  ||||||||| |||||| |||||||||||| || | ||||  | |||||||||||||||| ||| ||||    | ||||||||||||||     
T  51336180 attataaaatttgggcaaaaaaaatttacaacacatttat-agaagtttacgtaagaaattgcaagtaaataataaaaa----atttaaagaaattgtca 51336274  T
Q  100 aatttataaagatttatataagaaattcagataaatttacataaa 144  Q
    ||||||||||||||||||||| ||||||||   ||||||||||||    
T  51336275 aatttataaagatttatataaaaaattcaggagaatttacataaa 51336319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 19649515 - 19649406
Alignment:
Q  17 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttat 116  Q
    |||| ||| |||||||||||||||  ||| ||| || |||||||||||| ||| |||| |||  |||  ||||||||||||||||||||||| | |||||    
T  19649515 aaaaaaaaattgcaacacatttatagggaattacataagaaattgcaagcaaataatccaaa--aaatctaaagaaattgtccaatttataagggtttat 19649418  T
Q  117 ataagaaattca 128  Q
    ||||||||||||    
T  19649417 ataagaaattca 19649406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 48206838 - 48206963
Alignment:
Q  15 gcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagattt 114  Q
    |||||| ||||||||||||||||||| ||  |||| || |||||||||||||||| ||||||   ||||  |||| |||||||| ||||||||  | |||    
T  48206838 gcaaaagaaatttgcaacacatttataagtgtttacataagaaattgcaagtaaataatcaa---aaaatctaaaaaaattgtcaaatttataggggttt 48206934  T
Q  115 atataagaaattcagataaatttacataaa 144  Q
    ||||||| ||||||||  ||||||||||||    
T  48206935 atataag-aattcagaggaatttacataaa 48206963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 1781743 - 1781871
Alignment:
Q  12 tgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaaga 111  Q
    ||||||||| ||| |||||||||||||||  || |||| ||  ||||||||||| ||| ||||||   ||||  ||||||||||| |||||||||   |     
T  1781743 tgggcaaaaaaaaattgcaacacatttataggggtttacatacgaaattgcaagcaaataatcaa---aaaatctaaagaaattgcccaatttattgggg 1781839  T
Q  112 tttatataagaaattcagataaatttacataa 143  Q
    |||||||||||||||||||   ||||||||||    
T  1781840 tttatataagaaattcagagggatttacataa 1781871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 3178744 - 3178797
Alignment:
Q  75 aaaataaaaattaaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    |||| ||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  3178744 aaaaaaaaaactaaagaaattgcccaatttatagagatttatataagaaattca 3178797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 33103725 - 33103835
Alignment:
Q  12 tgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaaga 111  Q
    |||| |||| ||||||||||||||||||| |||||||| || ||||||| |||| ||| |||    | |||| ||||| ||||| |||||||||||  ||    
T  33103725 tgggtaaaaaaaatttgcaacacatttataaggatttacataagaaattacaagcaaataat----aaaaaatttaaataaattatccaatttataggga 33103820  T
Q  112 tttatataagaaatt 126  Q
     ||||||||||||||    
T  33103821 cttatataagaaatt 33103835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 19644474 - 19644345
Alignment:
Q  13 gggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagat 112  Q
    |||||||| ||||| | |||||||||||  ||| ||| || |||||||||||  ||| |||| ||| |||  | ||| ||||||| ||||||||||||||    
T  19644474 gggcaaaaaaaatt-gtaacacatttatagggaattacataagaaattgcaatcaaataatccaaa-aaatctaaaaaaaattgttcaatttataaagat 19644377  T
Q  113 ttatataagaaattcagataaatttacataaa 144  Q
    |||||||| ||||||| |  ||||||||||||    
T  19644376 ttatataaaaaattcatagcaatttacataaa 19644345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 5391441 - 5391551
Alignment:
Q  13 gggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagat 112  Q
    |||||||| ||||||||||||||||||| |||   || || |||||||||||| ||| ||| ||||    |  ||||||||||||||||||||||  | |    
T  5391441 gggcaaaaaaaatttgcaacacatttat-agggcgtacataagaaattgcaagcaaataataaaaa----atgtaaagaaattgtccaatttataggggt 5391535  T
Q  113 ttatataagaaattca 128  Q
    ||||||||||||||||    
T  5391536 ttatataagaaattca 5391551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 6280501 - 6280378
Alignment:
Q  16 caaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagattta 115  Q
    ||||| ||||||||||||||||||| | | |||| || | |||| ||||| |||  |||||||    |  |||| |||||||| |||||||| || ||||    
T  6280501 caaaaaaaatttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa----atctaaataaattgtcaaatttatagaggttta 6280406  T
Q  116 tataagaaattcagataaatttacataa 143  Q
    ||||||||||||||  ||||||||||||    
T  6280405 tataagaaattcagggaaatttacataa 6280378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 13856151 - 13856193
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  13856151 taaagaaattgtccaatttatagggatttatataagaaattca 13856193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 54546891 - 54546998
Alignment:
Q  17 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttat 116  Q
    |||| ||| ||| |||||||||||  ||||||| || |||||||| ||| ||| ||||||||    |  ||||||||||||||||||||||  | |||||    
T  54546891 aaaaaaaaattgtaacacatttatagggatttacataagaaattgtaagcaaataatcaaaa----atctaaagaaattgtccaatttataggggtttat 54546986  T
Q  117 ataagaaattca 128  Q
    ||||||||||||    
T  54546987 ataagaaattca 54546998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 39352245 - 39352298
Alignment:
Q  85 ttaaagaaattgtccaatttataaagatttatataagaaattcagataaattta 138  Q
    |||||||||||||  |||||||| |||||||||||||||||| ||| |||||||    
T  39352245 ttaaagaaattgttaaatttatagagatttatataagaaatttagagaaattta 39352298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 43347481 - 43347355
Alignment:
Q  12 tgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaaga 111  Q
    ||||||||| ||||| |||||| | |||| ||| |||| || |||||||||||| ||| ||||||||   ||  ||||||||||| ||||||| ||  |     
T  43347481 tgggcaaaaaaaatt-gcaacataattat-agggtttacataagaaattgcaagcaaataatcaaaa---aatctaaagaaattgcccaatttgtagggg 43347387  T
Q  112 tttatataagaaattcagataaatttacataa 143  Q
    |||||||||||||||||||  |||||||||||    
T  43347386 tttatataagaaattcagaggaatttacataa 43347355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 8926752 - 8926874
Alignment:
Q  17 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttat 116  Q
    |||| |||| |||||||||||||| ||| || | || |||||||||||| ||| ||||||||   ||  || |||||||| | ||||||||  | |||||    
T  8926752 aaaaaaaatctgcaacacatttataagggttaacataagaaattgcaagcaaataatcaaaa---aatctacagaaattgccaaatttataggggtttat 8926848  T
Q  117 ataagaaattcagataaatttacata 142  Q
    || |||||||||||  ||||||||||    
T  8926849 atcagaaattcagaggaatttacata 8926874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 8950580 - 8950538
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    ||||||||||| ||||||||||  |||||||||||||||||||    
T  8950580 taaagaaattgcccaatttatagggatttatataagaaattca 8950538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 22845438 - 22845381
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 143  Q
    ||||||||||||| ||||||||  | ||||||||||||||| || | |||||||||||    
T  22845438 taaagaaattgtcaaatttataggggtttatataagaaatttaggtgaatttacataa 22845381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 36539613 - 36539724
Alignment:
Q  12 tgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaaga 111  Q
    ||||| ||| ||| |||||||||||||||  || |||| ||  ||||||||||  ||| ||||||||   || |||||||||||| ||||||||||  |     
T  36539613 tgggcgaaaaaaaattgcaacacatttataggggtttacataggaaattgcaaacaaataatcaaaa---aatttaaagaaattgcccaatttatagggg 36539709  T
Q  112 tttatataagaaatt 126  Q
     ||||||||||||||    
T  36539710 attatataagaaatt 36539724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 47889772 - 47889820
Alignment:
Q  80 aaaaattaaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    |||| |||||||||||| ||||||||||   ||||||||||||||||||    
T  47889772 aaaatttaaagaaattgcccaatttataggaatttatataagaaattca 47889820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 28750808 - 28750669
Alignment:
Q  1 attataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtcca 100  Q
    |||||||| |||||| |||| ||| ||||||||||||||| ||  |||| || ||||||| |||| ||| ||||||||   ||||||||||||||| |||    
T  28750808 attataaagcatgggtaaaaaaaaattgcaacacatttataagagtttacataagaaattacaagcaaataatcaaaa---aaattaaagaaattgccca 28750712  T
Q  101 atttataaagatttatataagaaattcagataaatttacataa 143  Q
    |||||||  | |||||||||||||||||||  |||||||||||    
T  28750711 atttataggggtttatataagaaattcagaagaatttacataa 28750669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 27863751 - 27863808
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 143  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||    
T  27863751 taaagaaattgtccaatttataagggtttatataagaaattcagagaaatttacataa 27863808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 13103223 - 13103136
Alignment:
Q  54 agaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataaa 144  Q
    |||||||||||| ||| ||||||||   ||  ||||||||||| ||||||||||||| |||||||||||||||||||  ||||||||||||    
T  13103223 agaaattgcaagcaaataatcaaaa---aatctaaagaaattgcccaatttataaaggtttatataagaaattcagaggaatttacataaa 13103136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 14309874 - 14309832
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    ||||||||||| ||||||||||  |||||||||||||||||||    
T  14309874 taaagaaattgcccaatttatagggatttatataagaaattca 14309832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 34103737 - 34103794
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 143  Q
    ||||||||||  ||||||||||  | |||||||||||||||||||  |||||||||||    
T  34103737 taaagaaatttcccaatttatacgggtttatataagaaattcagaggaatttacataa 34103794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 41674849 - 41674725
Alignment:
Q  17 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttat 116  Q
    |||| |||||||||||||||||||  |||||||||| |||||||||||| ||| | | ||||  |||  ||||||||||||||||||||||| | |||||    
T  41674849 aaaaaaaatttgcaacacatttatagggatttatataagaaattgcaagcaaatagttaaaa--aaatctaaagaaattgtccaatttataagggtttat 41674752  T
Q  117 ataagaaattcagataaatttacataa 143  Q
    |||| ||||||||| | ||||||||||    
T  41674751 ataaaaaattcagagagatttacataa 41674725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 26 - 126
Target Start/End: Complemental strand, 23685503 - 23685406
Alignment:
Q  26 ttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaat 125  Q
    |||||||| |||||| ||| |||| || |||||||||||| ||| |||||||||| |   |||| |||||||| ||||||||| ||||||||||||||||    
T  23685503 ttgcaacatatttataagggtttacataagaaattgcaagcaaataatcaaaatata---taaataaattgtcaaatttataaggatttatataagaaat 23685407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 33009654 - 33009767
Alignment:
Q  13 gggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaat-taaagaaattgtccaatttataaaga 111  Q
    |||||||| || |||||||||| |||||  || |||| || | |||||||||| ||| |||   ||||||||| ||||||||||||||||||||||| ||    
T  33009654 gggcaaaaaaattttgcaacacgtttatatgggtttacataaaaaattgcaagcaaataat---aataaaaatctaaagaaattgtccaatttataagga 33009750  T
Q  112 tttatataagaaattca 128  Q
    ||||||||| |||||||    
T  33009751 tttatataacaaattca 33009767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 14539847 - 14539723
Alignment:
Q  16 caaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagattta 115  Q
    ||||| |||||||||||||||||||  |  ||||||| |||||||||||| ||| |||   || ||||  ||||||||||| | ||||||||   |||||    
T  14539847 caaaaaaaatttgcaacacatttataggtgtttatataagaaattgcaagaaaataat---aaaaaaatctaaagaaattgcctaatttataggaattta 14539751  T
Q  116 tataagaaattcagataaatttacataa 143  Q
    |||||||||||||||  || ||||||||    
T  14539750 tataagaaattcagaggaaattacataa 14539723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 28321850 - 28321722
Alignment:
Q  12 tgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaaga 111  Q
    ||||||||  ||| |||||||||||||||  || ||||||| |||||||| ||| ||| ||||||   |||| | || ||||||| ||||||||||| |     
T  28321850 tgggcaaataaaaattgcaacacatttataggggtttatataagaaattggaagcaaataatcaa---aaaattcaatgaaattgcccaatttataaggg 28321754  T
Q  112 tttatataagaaattcagataaatttacataa 143  Q
    ||||||||||| ||||||   |||||||||||    
T  28321753 tttatataagatattcaggagaatttacataa 28321722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 6318605 - 6318492
Alignment:
Q  13 gggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagat 112  Q
    |||||||| ||| |||||||||||||||  ||  ||| ||  ||||||||||| ||| ||| ||||  |||  ||||||||||| ||||||||||  |||    
T  6318605 gggcaaaaaaaaattgcaacacatttataggggcttacatttgaaattgcaagcaaataataaaaa--aaatctaaagaaattgcccaatttatagggat 6318508  T
Q  113 ttatataagaaattca 128  Q
    ||||||||||||||||    
T  6318507 ttatataagaaattca 6318492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 29846494 - 29846536
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    ||||||||||||||||||||||  | |||||||||||||||||    
T  29846494 taaagaaattgtccaatttataggggtttatataagaaattca 29846536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 25665249 - 25665316
Alignment:
Q  56 aaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaatt 126  Q
    |||||||||| ||| ||||||||   || |||||||||||  ||||||||||||  |||||||||||||||    
T  25665249 aaattgcaagcaaataatcaaaa---aacttaaagaaattacccaatttataaatgtttatataagaaatt 25665316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 40277364 - 40277324
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaatt 126  Q
    ||||||||||| ||||||||||  |||||||||||||||||    
T  40277364 taaagaaattgcccaatttatagggatttatataagaaatt 40277324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 30745367 - 30745454
Alignment:
Q  54 agaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataaa 144  Q
    |||||||||||||||| ||||||||   || |||||||||||||||||||||||  |||||||| |||||||||||| |||||||||||||    
T  30745367 agaaattgcaagtaaataatcaaaa---aatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaa 30745454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 30766818 - 30766905
Alignment:
Q  54 agaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataaa 144  Q
    |||||||||||||||| ||||||||   || |||||||||||||||||||||||  |||||||| |||||||||||| |||||||||||||    
T  30766818 agaaattgcaagtaaataatcaaaa---aatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaa 30766905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 44462594 - 44462496
Alignment:
Q  46 tttatatgagaaattgcaagtaaacaatcaaaataaaaatta-aagaaattgtccaatttataaagatttatataagaaattcagataaatttacataaa 144  Q
    ||||||| ||||| |||||||||| |||||||| |||||| | ||||||||||| |||||||| || ||| ||||||||||||||||| |||||||||||    
T  44462594 tttatataagaaactgcaagtaaataatcaaaa-aaaaatcagaagaaattgtctaatttatagaggtttgtataagaaattcagatagatttacataaa 44462496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 26835329 - 26835447
Alignment:
Q  22 aaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataag 121  Q
    |||||||||||||||||||  || |||| ||||||||||||||| ||| ||||||   ||||  |||| ||||||| |||||||||    ||||||||||    
T  26835329 aaatttgcaacacatttatatgggtttacatgagaaattgcaagcaaataatcaa---aaaatctaaaaaaattgttcaatttataggagtttatataag 26835425  T
Q  122 aaattcagataaatttacataa 143  Q
    ||||||| || |||||||||||    
T  26835426 aaattcatatgaatttacataa 26835447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 44107534 - 44107469
Alignment:
Q  13 gggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaa 78  Q
    ||||||||  |||||||||||||||||| ||| |||| || |||||||||||||||| ||||||||    
T  44107534 gggcaaaaataatttgcaacacatttataaggttttacataagaaattgcaagtaaataatcaaaa 44107469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 37189697 - 37189749
Alignment:
Q  91 aaattgtccaatttataaagatttatataagaaattcagataaatttacataa 143  Q
    ||||||||||||||||| |||||||||||||||||||| | | ||||||||||    
T  37189697 aaattgtccaatttatagagatttatataagaaattcatagagatttacataa 37189749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 23908337 - 23908379
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  23908337 taaagaaattgtccaatttatagggatttatataagaaattca 23908379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 10907794 - 10907667
Alignment:
Q  12 tgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaaga 111  Q
    ||||||||| ||||| |||||||||||||  |  | || || |||||||||||| ||| ||||||||   ||  |||||||||||||  |||||||  |     
T  10907794 tgggcaaaaaaaatt-gcaacacatttataggtgtctacataagaaattgcaagcaaataatcaaaa---aatctaaagaaattgtctgatttatagggg 10907699  T
Q  112 tttatataagaaattcagataaatttacataa 143  Q
    |||||||||||||||||||  |||||||||||    
T  10907698 tttatataagaaattcagaggaatttacataa 10907667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 13131948 - 13132005
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 143  Q
    ||||||||||||||||||||||  ||||||||||| ||||| |||  |||||||||||    
T  13131948 taaagaaattgtccaatttatagtgatttatataaaaaatttagaggaatttacataa 13132005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 5558291 - 5558402
Alignment:
Q  12 tgggcaaaataaatttgcaacacatttatcagga-tttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaag 110  Q
    ||||||||| ||| || ||||| |||||| |||| |||||||  ||||||||||| ||| ||||||||    |  ||||||||||||||||||||||  |    
T  5558291 tgggcaaaaaaaaattacaacatatttat-aggagtttatatatgaaattgcaagcaaataatcaaaa----atctaaagaaattgtccaatttataggg 5558385  T
Q  111 atttatataagaaattc 127  Q
     ||||||||||||||||    
T  5558386 gtttatataagaaattc 5558402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 45968652 - 45968715
Alignment:
Q  15 gcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaa 78  Q
    ||||||||||||  ||| |||||||  |||||||| || |||||||||||||||| ||||||||    
T  45968652 gcaaaataaattcacaatacatttaagaggatttacataagaaattgcaagtaaataatcaaaa 45968715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 3346838 - 3346880
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    ||||||||||||||||||||||  | |||||||||||||||||    
T  3346838 taaagaaattgtccaatttataggggtttatataagaaattca 3346880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 10156092 - 10156050
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    |||||||||||||||||||||| |  |||||||||||||||||    
T  10156092 taaagaaattgtccaatttatagaagtttatataagaaattca 10156050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 42456623 - 42456681
Alignment:
Q  85 ttaaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 143  Q
    |||||||||||| ||||||||||  | ||||||||||||||||| |  |||||||||||    
T  42456623 ttaaagaaattgcccaatttataggggtttatataagaaattcataggaatttacataa 42456681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 1106762 - 1106822
Alignment:
Q  17 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaa 77  Q
    |||| ||||| ||||||||||||| || ||||| || |||||||||||| ||| |||||||    
T  1106762 aaaaaaaattagcaacacatttataagaatttacataagaaattgcaagcaaataatcaaa 1106822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 38859849 - 38859960
Alignment:
Q  29 caacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    ||||||||||||  || |||| || |||||||||||| ||| ||| ||||   ||  |||| |||||| ||||||||||  | |||||||||||||||||    
T  38859849 caacacatttataggggtttacataagaaattgcaagcaaataataaaaa---aatctaaaaaaattgcccaatttataggggtttatataagaaattca 38859945  T
Q  129 gataaatttacataa 143  Q
     |  |||||||||||    
T  38859946 taggaatttacataa 38859960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 12 - 140
Target Start/End: Original strand, 50328777 - 50328902
Alignment:
Q  12 tgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaaga 111  Q
    ||||||||| | ||||||||||||||||| ||| |||| || | ||||||||||| || ||| ||||   || ||||||||||||||||||||||| ||     
T  50328777 tgggcaaaaaatatttgcaacacatttataagggtttacataaaaaattgcaagtgaataataaaaa---aatttaaagaaattgtccaatttatagagg 50328873  T
Q  112 tttatataagaaattcagataaatttaca 140  Q
    ||||||||||||||| |||  ||||||||    
T  50328874 tttatataagaaattaagaggaatttaca 50328902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 35322837 - 35322722
Alignment:
Q  26 ttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaat 125  Q
    ||||||||| |||||  || ||||||| |||||||||||| ||| ||||||||   ||  |||||||||||| ||||||||| || ||||||||||| ||    
T  35322837 ttgcaacacttttataggggtttatataagaaattgcaagcaaataatcaaaa---aatctaaagaaattgttcaatttatagaggtttatataagagat 35322741  T
Q  126 tcagataaatttacataaa 144  Q
    ||||| ||||||| |||||    
T  35322740 tcagagaaatttatataaa 35322722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 322696 - 322584
Alignment:
Q  12 tgggcaaaataaatttgcaacacatttatcagga-tttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaag 110  Q
    ||||||||| ||| |||||||||||||| ||||  |||| || |||||||||||| ||| ||||||||   || |||||||||||||||||||||||  |    
T  322696 tgggcaaaaaaaaattgcaacacattta-caggtgtttacataagaaattgcaagcaaataatcaaaa---aatttaaagaaattgtccaatttataggg 322601  T
Q  111 atttatataagaaattc 127  Q
     ||||||||||||||||    
T  322600 gtttatataagaaattc 322584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 11054439 - 11054550
Alignment:
Q  17 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttat 116  Q
    |||| ||| ||||||||||||||| | | |||| || |||||||||||| ||| ||  |||| ||| | |||||| |||| |||||||||| || |||||    
T  11054439 aaaaaaaagttgcaacacatttataaaggtttacataagaaattgcaagcaaataaataaaaaaaatactaaagagattgcccaatttatagaggtttat 11054538  T
Q  117 ataagaaattca 128  Q
    ||||||||||||    
T  11054539 ataagaaattca 11054550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 12792373 - 12792250
Alignment:
Q  17 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaat-taaagaaattgtccaatttataaagattta 115  Q
    |||| |||||||||||||||||||     ||||||| ||||||| |||| ||| ||||    ||||||| ||||| ||||| ||||||||||  | ||||    
T  12792373 aaaaaaaatttgcaacacatttatagatgtttatataagaaatttcaagcaaataatc----taaaaatctaaagtaattgcccaatttataggggttta 12792278  T
Q  116 tataagaaattcagataaatttacataa 143  Q
    ||||||||||||||| ||||||||||||    
T  12792277 tataagaaattcagagaaatttacataa 12792250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 5780836 - 5780790
Alignment:
Q  80 aaaaattaaagaaattgtccaatttataaagatttatataagaaatt 126  Q
    |||| |||||||||||| ||||||||||| |||||||||||||||||    
T  5780836 aaaatttaaagaaattgcccaatttataaggatttatataagaaatt 5780790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 47084064 - 47084121
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 143  Q
    ||||||||||  ||||||||||  | ||||||||||||||||||| ||||||||||||    
T  47084064 taaagaaattacccaatttataggggtttatataagaaattcagagaaatttacataa 47084121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 17888683 - 17888569
Alignment:
Q  26 ttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaat 125  Q
    |||||||||||||||  || |||| || |||||||||||| ||| ||| ||||   ||  ||||||||||| ||||||||||  |  |||||||||||||    
T  17888683 ttgcaacacatttataggggtttacataagaaattgcaagcaaataataaaaa---aatctaaagaaattgcccaatttatagggggttatataagaaat 17888587  T
Q  126 tcagataaatttacataa 143  Q
    ||| |  |||||||||||    
T  17888586 tcataggaatttacataa 17888569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 16338289 - 16338247
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    ||||||||||||||||||||||  ||||||||||| |||||||    
T  16338289 taaagaaattgtccaatttatagggatttatataaaaaattca 16338247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 52632570 - 52632612
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    ||||||||||| ||||||||||  |||||||||||||||||||    
T  52632570 taaagaaattgcccaatttatagggatttatataagaaattca 52632612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 9742609 - 9742552
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 143  Q
    ||||||||||| ||||||||||  | || ||||||||||||||||  |||||||||||    
T  9742609 taaagaaattgcccaatttataggggttaatataagaaattcagaggaatttacataa 9742552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 10094457 - 10094412
Alignment:
Q  98 ccaatttataaagatttatataagaaattcagataaatttacataa 143  Q
    ||||||||||  | ||||||||||||||||||| ||||||||||||    
T  10094457 ccaatttataggggtttatataagaaattcagagaaatttacataa 10094412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 19124852 - 19124757
Alignment:
Q  45 atttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 143  Q
    ||||| || |||||||| ||||||| ||| ||||   || ||||||||||||  ||||||| | |  |||||||||||||||||||  |||||||||||    
T  19124852 atttacataagaaattgtaagtaaataataaaaa---aatttaaagaaattgatcaatttacagatgtttatataagaaattcagaggaatttacataa 19124757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 42119592 - 42119731
Alignment:
Q  1 attataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtcca 100  Q
    |||||||| ||||| ||||| ||| |||||||||||||||  || |||| || ||||||| |||  ||| ||| ||||   ||  |||||||||||||||    
T  42119592 attataaagcatggacaaaagaaaattgcaacacatttataggggtttacataagaaattacaaacaaataataaaaa---aatctaaagaaattgtcca 42119688  T
Q  101 atttataaagatttatataagaaattcagataaatttacataa 143  Q
    ||||||| || |||||||||||||||||||  |||||||||||    
T  42119689 atttatagaggtttatataagaaattcagaggaatttacataa 42119731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 11856265 - 11856404
Alignment:
Q  1 attataaaacatgggcaaaataaatttgcaacacatttatcagga-tttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtcc 99  Q
    |||||||| | ||||||||| | | |||||||| |||||| |||| |||| || |||||||||||||||| ||||||||   ||  ||||||||||| ||    
T  11856265 attataaagcctgggcaaaaaataattgcaacatatttat-aggagtttacataagaaattgcaagtaaataatcaaaa---aatctaaagaaattgccc 11856360  T
Q  100 aatttataaagatttatataagaaattcagataaatttacataa 143  Q
    ||||||||  |||||||||||||||||||||   ||||||||||    
T  11856361 aatttatagtgatttatataagaaattcagagcgatttacataa 11856404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 36769218 - 36769093
Alignment:
Q  14 ggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatt 113  Q
    ||||||| |||||||||||||||||||  || |||| ||  ||||||||||| ||| ||||||||    |  ||||||||||| | |||| ||| || ||    
T  36769218 ggcaaaaaaaatttgcaacacatttataggggtttacatatgaaattgcaagcaaataatcaaaa----atctaaagaaattgcctaattcatagaggtt 36769123  T
Q  114 tatataagaaattcagataaatttacataa 143  Q
    |||||||||||||||||  |||||||||||    
T  36769122 tatataagaaattcagaggaatttacataa 36769093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 29790301 - 29790238
Alignment:
Q  80 aaaaattaaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 143  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||||||||| |  |||||||||||    
T  29790301 aaaaactaaagaaattgcccaatttataaaggtttatataagaaattcataagaatttacataa 29790238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 15475476 - 15475413
Alignment:
Q  80 aaaaattaaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 143  Q
    |||| ||||||||||| | ||||||||| |||||||||||| ||||| ||| ||||||||||||    
T  15475476 aaaatttaaagaaatttttcaatttatatagatttatataaaaaattaagagaaatttacataa 15475413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 9738059 - 9738017
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  9738059 taaagaaattgtccaatttatagggatttatataagaaattca 9738017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 33271346 - 33271304
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    |||||||||||||||||||||| || |||||||||||||||||    
T  33271346 taaagaaattgtccaatttatagaggtttatataagaaattca 33271304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 126
Target Start/End: Complemental strand, 25560460 - 25560363
Alignment:
Q  26 ttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatataagaaat 125  Q
    |||||||||||||||  || |||| || |||||||||||| ||| ||| |||||||    |||||||||||||||||||||| |  ||||||||||||||    
T  25560460 ttgcaacacatttatatgggtttacataagaaattgcaagcaaataat-aaaataatc--taaagaaattgtccaatttatagatgtttatataagaaat 25560364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 614468 - 614411
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 143  Q
    ||||||||||| | ||||||||  ||||||||||| |||||||||  |||||||||||    
T  614468 taaagaaattgccaaatttatagggatttatataaaaaattcagaggaatttacataa 614411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 8457109 - 8456997
Alignment:
Q  13 gggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagat 112  Q
    |||||||| ||| |||||||| ||||||  || |||| || |||||||||||| ||| ||| ||||   ||  ||||||||||| ||||||||||  |      
T  8457109 gggcaaaaaaaaattgcaacatatttataggggtttacataagaaattgcaagcaaataataaaaa---aatctaaagaaattgcccaatttataggggg 8457013  T
Q  113 ttatataagaaattca 128  Q
    ||||||||||||||||    
T  8457012 ttatataagaaattca 8456997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 29491554 - 29491433
Alignment:
Q  17 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttat 116  Q
    |||| ||| |||||||||||||||  |  |||  || |||||||||||| ||| ||||||||   || |||||||| ||||||||||||||  | || ||    
T  29491554 aaaaaaaaattgcaacacatttatatgtgtttgcataagaaattgcaagcaaataatcaaaa---aatttaaagaa-ttgtccaatttataggggtt-at 29491460  T
Q  117 ataagaaattcagataaatttacataa 143  Q
    |||||||||||| | ||||||||||||    
T  29491459 ataagaaattcatagaaatttacataa 29491433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 10112035 - 10112157
Alignment:
Q  19 aataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttatat 118  Q
    |||||| |||||||| ||||||  || |||| || ||||||||||| |||| ||||||||   || | ||||||||||||||||||||||   |||||||    
T  10112035 aataaaattgcaacatatttataggggtttacataagaaattgcaaataaataatcaaaa---aattaaaagaaattgtccaatttataagagtttatat 10112131  T
Q  119 aagaaattcagataaatttacataaa 144  Q
    |||||||| |||  ||||||||||||    
T  10112132 aagaaattaagaggaatttacataaa 10112157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 34697536 - 34697431
Alignment:
Q  12 tgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaaga 111  Q
    ||||||||||||  |||||||| |||||| || ||||| || |||||||||||| ||| |||   || ||||||||||||||||   ||||||||| |||    
T  34697536 tgggcaaaataatattgcaacatatttataagaatttacataagaaattgcaagcaaataat---aaaaaaaattaaagaaatttctcaatttatagaga 34697440  T
Q  112 tttatataa 120  Q
    |||||||||    
T  34697439 tttatataa 34697431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 16591449 - 16591394
Alignment:
Q  88 aagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 143  Q
    ||||||||| ||||||||||  ||||||||||||||||||  | ||||||||||||    
T  16591449 aagaaattgcccaatttatagtgatttatataagaaattcttagaaatttacataa 16591394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 21525410 - 21525452
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    ||||||||||||||||||||||  | |||||||||||||||||    
T  21525410 taaagaaattgtccaatttataggggtttatataagaaattca 21525452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 42072480 - 42072522
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    ||||||||||||||||||||||  | |||||||||||||||||    
T  42072480 taaagaaattgtccaatttataggggtttatataagaaattca 42072522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 16591501 - 16591440
Alignment:
Q  1 attataaaacatgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgc 62  Q
    ||||||||  |||||||||| ||| ||||||||||||||| ||| |||| || |||||||||    
T  16591501 attataaagtatgggcaaaaaaaaattgcaacacatttataagggtttacataagaaattgc 16591440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 17303262 - 17303133
Alignment:
Q  12 tgggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaaga 111  Q
    ||||||||| ||| |||||||||||||||   | |||| || |||||||||||| ||| ||| ||||  |||  ||||||||||| |||||||| || |     
T  17303262 tgggcaaaaaaaaattgcaacacatttatagtggtttacataagaaattgcaagcaaataataaaaa--aaatctaaagaaattgcccaatttacaaggg 17303165  T
Q  112 tttatataagaaattcagataaatttacataa 143  Q
    ||||||||||||||||| |  |||||||||||    
T  17303164 tttatataagaaattcataggaatttacataa 17303133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 19334706 - 19334594
Alignment:
Q  13 gggcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagat 112  Q
    |||||||| ||  |||||||| |||||| ||| ||||||| |||||||||||| ||| ||| ||||  |||  ||||||||||||||||||||||  | |    
T  19334706 gggcaaaaaaatattgcaacaaatttat-agggtttatataagaaattgcaagcaaataataaaaa--aaatctaaagaaattgtccaatttataggggt 19334610  T
Q  113 ttatataagaaattca 128  Q
    ||||||||||||||||    
T  19334609 ttatataagaaattca 19334594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 10334162 - 10334287
Alignment:
Q  15 gcaaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagattt 114  Q
    |||||| ||| |||||||||||||||  || |||| || |||||||||||| ||| | | ||||||     ||||||||||| |||||||||||   |||    
T  10334162 gcaaaagaaaattgcaacacatttataggggtttacataagaaattgcaagcaaatattaaaaatatc---taaagaaattgcccaatttataagagttt 10334258  T
Q  115 atataagaaattcagataaatttacataa 143  Q
    ||||||||||||||||  |||||||||||    
T  10334259 atataagaaattcagaggaatttacataa 10334287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 15017825 - 15017882
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 143  Q
    ||||||||||||||||||||||    |||||||||||||||||||  |||||||||||    
T  15017825 taaagaaattgtccaatttatacgcgtttatataagaaattcagaggaatttacataa 15017882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 33057798 - 33057691
Alignment:
Q  17 aaaataaatttgcaacacatttatcaggatttatatgagaaattgcaagtaaacaatcaaaataaaaattaaagaaattgtccaatttataaagatttat 116  Q
    |||| ||| ||||||||||||||| |||||||| || |||||||||||| ||| ||| ||||   ||  |||||||||||| |||||||||  |  ||||    
T  33057798 aaaaaaaaattgcaacacatttat-aggatttacataagaaattgcaagcaaataataaaaa---aatctaaagaaattgttcaatttataggggattat 33057703  T
Q  117 ataagaaattca 128  Q
    ||||||||||||    
T  33057702 ataagaaattca 33057691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 29556015 - 29555973
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    ||||||||||||||||||||||  | |||||||||||||||||    
T  29556015 taaagaaattgtccaatttataggggtttatataagaaattca 29555973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 29981189 - 29981147
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    |||||||||||||||||||||| |  |||||||||||||||||    
T  29981189 taaagaaattgtccaatttatagaagtttatataagaaattca 29981147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 32876606 - 32876564
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    ||||||||||||||||||||||  | |||||||||||||||||    
T  32876606 taaagaaattgtccaatttataggggtttatataagaaattca 32876564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 44164819 - 44164765
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttaca 140  Q
    ||||||||||| ||||||||||  | ||||||||||||||||| | |||||||||    
T  44164819 taaagaaattgcccaatttataggggtttatataagaaattcatagaaatttaca 44164765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 20907 - 20850
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 143  Q
    |||| ||||||||||||||||| || |||||||||||||||||||  |||||||||||    
T  20907 taaaaaaattgtccaatttatagagctttatataagaaattcagaggaatttacataa 20850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 54571 - 54613
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattca 128  Q
    ||||||||||||||||||||||  ||||||||||| |||||||    
T  54571 taaagaaattgtccaatttatagggatttatataaaaaattca 54613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 34528 - 34471
Alignment:
Q  86 taaagaaattgtccaatttataaagatttatataagaaattcagataaatttacataa 143  Q
    |||||||| ||||||||||||| ||||||||||||  ||||||||   ||||||||||    
T  34528 taaagaaactgtccaatttatagagatttatataaagaattcagagggatttacataa 34471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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