View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_11 (Length: 577)
Name: NF17288_low_11
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 2e-97; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 329 - 569
Target Start/End: Complemental strand, 19140677 - 19140435
Alignment:
| Q |
329 |
atctatgatcccaattaaagcatcatttattcctagaatcacccgttctattaaacactttaactagatcaaagtttaaa--ataaatggtcagtaatca |
426 |
Q |
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| T |
19140677 |
atctatgatcccaattaaagcatcatttattcctagaatcacccgttcaattaaacactttaactagatcaaagtttaaattataaatggttagtagtcg |
19140578 |
T |
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| Q |
427 |
ttccatctttaaaatcaatttatatatgatcaa-caaataaaaggcattgcacccaaattaaactaaataaaactagatatgtattatcaaaaatagtat |
525 |
Q |
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| T |
19140577 |
ttccatctttgaaatcaatttatatatgatcaaacatataaaaa-cattgcacccaaattaaactaaataaaactagatatgtattatcaaaaatagtat |
19140479 |
T |
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| Q |
526 |
ttcacagcctacatgattcaaacagatcaaacaagattcatctc |
569 |
Q |
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| T |
19140478 |
ttcacagcctacgtgattcaaatagatcaaacaagattcatctc |
19140435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 19142259 - 19142092
Alignment:
| Q |
20 |
gacgcctctatcaaagattgttgaatcatttcaacaaggaaattttattattagatttttgtcacgtgaattgaattatatttcaaaatccaaatttaga |
119 |
Q |
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| T |
19142259 |
gacgcctctatcaaagattgttgaatcatttcaacaaggcaattttattattagatttttgtcacgtgaattgaattatatttcaaaatccaaaattaga |
19142160 |
T |
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| Q |
120 |
caagcatttcctccggatacaactttaaaaataatcgaactcaaccattacatcaaattgcagtgcat |
187 |
Q |
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| T |
19142159 |
caagcatttcctccggatacaactttaaaaataatcgaactcaaccattacatcaaattgcagtgcat |
19142092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 399 - 569
Target Start/End: Original strand, 19142485 - 19142655
Alignment:
| Q |
399 |
aaagtttaaaataaatggtcagtaatcattccatctttaaaatcaatttatatatgatcaacaaataaaaggcattgcacccaaattaaactaaataaaa |
498 |
Q |
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| T |
19142485 |
aaagtttaaaaggtatgatcagtagttattcaatctttgcaatcaattaaaatatgattaggatataaaaggcattgcacacaaattaaattgaataaaa |
19142584 |
T |
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| Q |
499 |
ctagatatgtattatcaaaaatagtatttcacagcctacatgattcaaacagatcaaacaagattcatctc |
569 |
Q |
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| T |
19142585 |
ctagatttgcattatcaaatatagtgtttcatagtcaatatgatccaaatagattcaacaatattcatctc |
19142655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 19138915 - 19138866
Alignment:
| Q |
236 |
atcaatttcttgaattagagttctcttcaaaggttacaactccccaattc |
285 |
Q |
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| T |
19138915 |
atcaattccttgaattagagttctcttcaaaggttacaacttcctaattc |
19138866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 233
Target Start/End: Complemental strand, 19140717 - 19140675
Alignment:
| Q |
191 |
aataatgttacaccggttttatgatgattaacaaaactacatc |
233 |
Q |
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| T |
19140717 |
aataatgttccaccggttttatgatgattaacaaaattacatc |
19140675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 570
Target Start/End: Complemental strand, 38026786 - 38026734
Alignment:
| Q |
518 |
aatagtatttcacagcctacatgattcaaacagatcaaacaagattcatctca |
570 |
Q |
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| T |
38026786 |
aatagtatttcacaacctacatggttcaagcagaacaaatcagattcatctca |
38026734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 501
Target Start/End: Complemental strand, 40293387 - 40293311
Alignment:
| Q |
425 |
cattccatctttaaaatcaatttatatatgatcaacaaataaaaggcattgcacccaaattaaactaaataaaacta |
501 |
Q |
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| T |
40293387 |
cattcaatctttgaaatcaatttatatatgatcaagatataaaaagtattgcacataaattaaacataataaaacta |
40293311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 325 - 489
Target Start/End: Complemental strand, 1192866 - 1192708
Alignment:
| Q |
325 |
gttaatctatgatcccaattaaagcatcatttattcctagaatcacccgttctattaaacactttaactagatcaaagtttaaaataaatggtcagtaat |
424 |
Q |
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| T |
1192866 |
gttaatctattatcacaatcaaacaatcatttatctctagactaacccgtttaattgaacaatttaattagatccaagtt------aattggtcaatagt |
1192773 |
T |
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| Q |
425 |
cattccatctttaaaatcaatttatatatgatcaacaaataaaaggcattgcacccaaattaaac |
489 |
Q |
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| T |
1192772 |
cattcaatctttgaaatcaatttatatatgatcacaatataaaaaacattgcacacaacttaaac |
1192708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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