View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_13 (Length: 568)
Name: NF17288_low_13
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 26 - 551
Target Start/End: Original strand, 40182872 - 40183397
Alignment:
| Q |
26 |
agagacactcgaacttgacgtttcatctgatcaaagcgctacttcagccgtggacactattatatcaaaatacggacgtatcgacattctagttaataac |
125 |
Q |
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| T |
40182872 |
agagacactcgaacttgacgtttcatctgatcaaagcgctacttcagccgtggacactattatatcaaaatacggacgtatcgacattctagttaataac |
40182971 |
T |
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| Q |
126 |
gccggaataggtagcacgggtccattagccgaattaccactagacactattagaaaaacattggaaattaacacgttgggacaactaagaatggtgcaac |
225 |
Q |
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| T |
40182972 |
gccggaataggtagcacaggtccattagccgaattaccactagacactattagaaaaacattggaaattaacacgttgggacaactaagaatggtgcaac |
40183071 |
T |
|
| Q |
226 |
aagttgtgcctcacatggctctgnnnnnnngtggaaccatagttaatgttggaagtgtagttggaaatatttcaacaccatgggcagggtcatattgtgc |
325 |
Q |
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| T |
40183072 |
aagttgtgcctcacatggctctgaaaaaaagtggaaccatagttaatgttggaagtgtagttgggaatatttcaacaccatgggcagggtcatattgtgc |
40183171 |
T |
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| Q |
326 |
tagtaaaagtgctattcatgcaatgtcaaatagtttgcggttggaattgaagccatttggaataaatgttgttttggttatgcctggatccattagatca |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
40183172 |
tagtaaaagtgctattcatgcaatgtcaaatagtttgcggttagaattgaagccatttgggatcaatgttgttttggttatgcctggatccattagatca |
40183271 |
T |
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| Q |
426 |
aatttagggaaagctaatttggagaaattaagtgattatgattggaagctttataaggattttaaggaagctatatcggagagagcaagagcttctcaag |
525 |
Q |
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| T |
40183272 |
aatttagggaaagctaatttggagaaattaagtgattatgattggaagctttataaggattttaaggaagctatatcggagagagcaagagcttctcaag |
40183371 |
T |
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| Q |
526 |
gtggaaaagcaacggatggtagagtt |
551 |
Q |
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| T |
40183372 |
gtggaaaagcaacggatggtagagtt |
40183397 |
T |
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