View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17288_low_20 (Length: 506)
Name: NF17288_low_20
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 31036835 - 31037328
Alignment:
| Q |
1 |
actcatcaaatgcgctggatggcaaaggcgttggcgtttggtctaatggagggccgatggccagtgaatggaaaagatcgtatacagagaaggttgcatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
31036835 |
actcatcaaatgcgctggatggcaaaggcgttggcgtatggtctaatggagggccgagggccagtgaatggaaaaaatcgtatacagagaaggttgtatc |
31036934 |
T |
|
| Q |
101 |
gtgtaaaagtatatagagaagctgatacaaagttggattatttgacattaaggtttggtcaagtttcttaaagcttgtgtggtaccttagttgaaaacat |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31036935 |
gtgtaaaagtatatagagaagctgagacaaagttggattatttgacattaaggtttggtcaagtttcttaaagcttgtgtggtaccttagttgaaaacat |
31037034 |
T |
|
| Q |
201 |
agtatattacaggtacattctcattctgatgtagtttgtagacgaaggaaaaggtactattcctttttgaacattctctctcagctctattttcttcctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31037035 |
agtatattacaggtacattctcattctgatgtagtttgtagacgaaggaaaaggtactattcctttttgaacattctctctcagctctattttcttcctt |
31037134 |
T |
|
| Q |
301 |
cttaaagataacaatacttga------ctcctttcatgtcacattctagtgtcgaaaacatttgtgtgaaacctaaacatcatgtgttgttttgtcttca |
394 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
31037135 |
cttaaagataacaatacttgacaatatctcctttcatgtcacattctagtgtcgaaaacatttgtgtgaaacctaagcatcatgtgttgttctgtcttca |
31037234 |
T |
|
| Q |
395 |
tcatggaacccttcaacatcaacactttgttcaatgttcacagaaaggcattatttcttcaccacaatcattcacatggaaacaaggtcaacta |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31037235 |
tcatggaacccttcaacatcaacactttgttcaatgttcacagaaaggcattatttcttcaccacaatcattcacatggaaacaaggtcaacta |
31037328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University