View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_23 (Length: 479)
Name: NF17288_low_23
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 191 - 469
Target Start/End: Complemental strand, 21708979 - 21708701
Alignment:
| Q |
191 |
tggttaccaaacaacattttgaggacatgaagtttgaacatatatgagagaccagtgtgagtgtcgtcgtgacttgtggcttttggaatgaattcaaaag |
290 |
Q |
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| T |
21708979 |
tggttcccaaacaacattttgaggacatgaagtttgaacatatatgagagaccagtgtgagtgtcgtcgtgacttgtggcttttggaatgaattcaaaag |
21708880 |
T |
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| Q |
291 |
aaactttgatgattgaaaatgtagaatccgaggtatttagtgtctcaaagtagttcataaaagttaaagatagtaaatcaatttggtaactgttggaata |
390 |
Q |
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| T |
21708879 |
aaactttgatgattgaaaatgtagaattcgaggtatttagtgtctcaaagtagttcataaaagttaaagatagtaaatcaatttggtaactgtttgaata |
21708780 |
T |
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| Q |
391 |
aagttggaaatttgaattgacaaattgtttgagtcatacatagttgagaatgcaaatttctattgatctctattctgtg |
469 |
Q |
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| T |
21708779 |
aagttggaaatttgaattgacaaattgtttgagtcatacatagttgagaatgcaaatttctattgatctctattctgtg |
21708701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 303 - 453
Target Start/End: Complemental strand, 21710226 - 21710072
Alignment:
| Q |
303 |
ttgaaaatgtagaatccgaggtattt--agtgtctcaaagtagttcataaaagttaaagatagtaaatcaatttggtaactgttggaat-aaagttggaa |
399 |
Q |
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| T |
21710226 |
ttgaaaatgtagaattcgaggtgttttcaatgtctcataatagttcatgaaagttgaagagagttaatcaatttagtaaatgtcgtaattaaagttggaa |
21710127 |
T |
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| Q |
400 |
at-ttgaattgacaaattgtttgagtcatacatagttgagaatgcaaatttctat |
453 |
Q |
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| T |
21710126 |
atattgaattgacaaaatgtttaaggcataaatagttgagaatgcaaatttctat |
21710072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 21705982 - 21705949
Alignment:
| Q |
36 |
atcacattcaccaaatatatatttcagctcagga |
69 |
Q |
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| T |
21705982 |
atcacattcaccaaatatatatttcagctcagga |
21705949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 21713549 - 21713589
Alignment:
| Q |
36 |
atcacattcaccaaatatatatttcagctcaggagcttttg |
76 |
Q |
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| T |
21713549 |
atcacattcaccaaatatatatttcagctcatgaccttttg |
21713589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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