View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17288_low_29 (Length: 401)

Name: NF17288_low_29
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17288_low_29
NF17288_low_29
[»] chr5 (4 HSPs)
chr5 (1-212)||(7174703-7174906)
chr5 (211-324)||(7174961-7175074)
chr5 (274-320)||(11685947-11685993)
chr5 (274-320)||(16203800-16203846)
[»] scaffold0697 (1 HSPs)
scaffold0697 (274-334)||(1638-1698)
[»] chr7 (4 HSPs)
chr7 (274-334)||(1433448-1433508)
chr7 (274-320)||(3721101-3721147)
chr7 (274-334)||(19206044-19206104)
chr7 (274-334)||(22484019-22484079)
[»] chr1 (3 HSPs)
chr1 (274-334)||(21530683-21530743)
chr1 (274-324)||(22907344-22907394)
chr1 (274-322)||(1864885-1864933)
[»] scaffold0168 (1 HSPs)
scaffold0168 (274-322)||(21049-21097)
[»] chr6 (2 HSPs)
chr6 (274-334)||(5732515-5732575)
chr6 (274-320)||(7086803-7086849)
[»] chr3 (3 HSPs)
chr3 (276-324)||(32804547-32804595)
chr3 (295-323)||(11658820-11658848)
chr3 (276-320)||(49505161-49505205)
[»] chr2 (2 HSPs)
chr2 (274-320)||(44860328-44860374)
chr2 (274-322)||(30527600-30527648)
[»] scaffold0123 (1 HSPs)
scaffold0123 (212-316)||(44467-44572)
[»] scaffold0110 (1 HSPs)
scaffold0110 (274-334)||(28844-28904)
[»] scaffold0024 (1 HSPs)
scaffold0024 (276-324)||(68249-68297)
[»] chr8 (2 HSPs)
chr8 (274-322)||(33405389-33405437)
chr8 (278-334)||(39954288-39954344)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 7174703 - 7174906
Alignment:
Q  1 atggacaaatggcaaatgaggannnnnnngaataaataaaagtaagagatgaaattatggtgtcgtatttattttccatttcttagagactatttccttt 100  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7174703 atggacaaatggcaaatgaggatttttttgaataaataaaagtaagagatgaaattatggtgtcgtatttattttccatttcttagagactatttccttt 7174802  T
Q  101 gatgttagccaacaataacaaactaacaaaccctaaaagaattactattccattgcacttgaagacaactaaaattcttattcattcatatttcacatca 200  Q
    |||||||||||||||        ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7174803 gatgttagccaacaa--------taacaaaccctaaaagaattactatcccattgcacttgaagacaactaaaattcttattcattcatatttcacagca 7174894  T
Q  201 ccatacatcaaa 212  Q
     |||||||||||    
T  7174895 tcatacatcaaa 7174906  T

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Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 211 - 324
Target Start/End: Original strand, 7174961 - 7175074
Alignment:
Q  211 aacacttctcaaattaagcgtgtccccttatcggacacgtgttgtgttgacatcgatacaatgccgacacatataattatgccaaattatgcgattttct 310  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| ||||||||    
T  7174961 aacacttctcaaattaggcgtgtccccttatcggacacgtgttgtgttgacatcgacacgatgctgacacatataattatgccaaattatgtgattttct 7175060  T
Q  311 caaattattaacgg 324  Q
    ||||||||||||||    
T  7175061 caaattattaacgg 7175074  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 11685993 - 11685947
Alignment:
Q  274 ccgacacatataattatgccaaattatgcgattttctcaaattatta 320  Q
    ||||||||||||||||  | ||||||||||| |||||||||||||||    
T  11685993 ccgacacatataattacactaaattatgcgactttctcaaattatta 11685947  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 16203800 - 16203846
Alignment:
Q  274 ccgacacatataattatgccaaattatgcgattttctcaaattatta 320  Q
    ||||||||||||||||  | |||||||| ||||||||||||||||||    
T  16203800 ccgacacatataattacactaaattatgagattttctcaaattatta 16203846  T

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Target: scaffold0697 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 1698 - 1638
Alignment:
Q  274 ccgacacatataattatgccaaattatgcgattttctcaaattattaacgggatcggcgtg 334  Q
    ||||||| ||||||||| |||||||||  ||||||||||||||||||||||  ||||||||    
T  1698 ccgacacttataattataccaaattatatgattttctcaaattattaacggtgtcggcgtg 1638  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 1433508 - 1433448
Alignment:
Q  274 ccgacacatataattatgccaaattatgcgattttctcaaattattaacgggatcggcgtg 334  Q
    ||||||||||||||||  |||||| ||| ||||||||||||||||||||||  ||||||||    
T  1433508 ccgacacatataattacaccaaatgatgtgattttctcaaattattaacggtgtcggcgtg 1433448  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 3721147 - 3721101
Alignment:
Q  274 ccgacacatataattatgccaaattatgcgattttctcaaattatta 320  Q
    ||||||||||||||||| | |||||||| ||||||||||||||||||    
T  3721147 ccgacacatataattatactaaattatgtgattttctcaaattatta 3721101  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 19206104 - 19206044
Alignment:
Q  274 ccgacacatataattatgccaaattatgcgattttctcaaattattaacgggatcggcgtg 334  Q
    |||||||||||||||||    ||||||| |||||||||||||||||| |||  ||||||||    
T  19206104 ccgacacatataattataatgaattatgtgattttctcaaattattagcggtgtcggcgtg 19206044  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 22484079 - 22484019
Alignment:
Q  274 ccgacacatataattatgccaaattatgcgattttctcaaattattaacgggatcggcgtg 334  Q
    ||||||||||||||||| |  |||||||| ||||||| ||||||||| |||  ||||||||    
T  22484079 ccgacacatataattatactgaattatgcaattttctaaaattattagcggtgtcggcgtg 22484019  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 21530743 - 21530683
Alignment:
Q  274 ccgacacatataattatgccaaattatgcgattttctcaaattattaacgggatcggcgtg 334  Q
    ||||||| ||||||||| |||||||||  ||||||||||||||||||||||  ||||||||    
T  21530743 ccgacacttataattataccaaattatatgattttctcaaattattaacggtgtcggcgtg 21530683  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 22907344 - 22907394
Alignment:
Q  274 ccgacacatataattatgccaaattatgcgattttctcaaattattaacgg 324  Q
    ||||||| ||||||||| |||||||||   |||||||||||||||||||||    
T  22907344 ccgacacttataattataccaaattatataattttctcaaattattaacgg 22907394  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 1864885 - 1864933
Alignment:
Q  274 ccgacacatataattatgccaaattatgcgattttctcaaattattaac 322  Q
    ||||||||||||||||  |  ||||||| ||||||||||||||||||||    
T  1864885 ccgacacatataattacactgaattatgtgattttctcaaattattaac 1864933  T

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Target: scaffold0168 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 21097 - 21049
Alignment:
Q  274 ccgacacatataattatgccaaattatgcgattttctcaaattattaac 322  Q
    ||||||||||||||||| || | ||||| ||||||||||||||||||||    
T  21097 ccgacacatataattataccgacttatgtgattttctcaaattattaac 21049  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 5732515 - 5732575
Alignment:
Q  274 ccgacacatataattatgccaaattatgcgattttctcaaattattaacgggatcggcgtg 334  Q
    ||||||||||||||||  | ||| |||| ||||||||||||||||||||||  ||||||||    
T  5732515 ccgacacatataattacactaaaatatgtgattttctcaaattattaacggtgtcggcgtg 5732575  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 7086849 - 7086803
Alignment:
Q  274 ccgacacatataattatgccaaattatgcgattttctcaaattatta 320  Q
    ||||||||||||||||  | |||||||| ||||||||||||||||||    
T  7086849 ccgacacatataattacactaaattatgtgattttctcaaattatta 7086803  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 32804547 - 32804595
Alignment:
Q  276 gacacatataattatgccaaattatgcgattttctcaaattattaacgg 324  Q
    ||||||||||||||  | |||||||| ||||||||||||||||||||||    
T  32804547 gacacatataattacactaaattatgtgattttctcaaattattaacgg 32804595  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 323
Target Start/End: Complemental strand, 11658848 - 11658820
Alignment:
Q  295 aattatgcgattttctcaaattattaacg 323  Q
    |||||||||||||||||||||||||||||    
T  11658848 aattatgcgattttctcaaattattaacg 11658820  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 49505161 - 49505205
Alignment:
Q  276 gacacatataattatgccaaattatgcgattttctcaaattatta 320  Q
    ||||||||||||||  | |||||||| ||||||||||||||||||    
T  49505161 gacacatataattacactaaattatgtgattttctcaaattatta 49505205  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 44860374 - 44860328
Alignment:
Q  274 ccgacacatataattatgccaaattatgcgattttctcaaattatta 320  Q
    ||||||||||||||||  |  ||||||||||||||||||||||||||    
T  44860374 ccgacacatataattacactgaattatgcgattttctcaaattatta 44860328  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 30527600 - 30527648
Alignment:
Q  274 ccgacacatataattatgccaaattatgcgattttctcaaattattaac 322  Q
    ||||||||||||||||  | |||||||  ||||||||||||||||||||    
T  30527600 ccgacacatataattacactaaattatatgattttctcaaattattaac 30527648  T

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Target: scaffold0123 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 44467 - 44572
Alignment:
Q  212 acacttctcaaattaagcgtgtccccttatcggacacgtgttgtgttga-catcgatacaatgccgacacatataattatgccaaattatgcgattttct 310  Q
    |||||||||| ||||| | ||||||  | |||||||||||||||||  | || ||| || || ||||||||||||||||  |  ||||||| ||||||||    
T  44467 acacttctcagattaaccatgtcccagtgtcggacacgtgttgtgtccaacaccgacacgataccgacacatataattacactgaattatgtgattttct 44566  T
Q  311 caaatt 316  Q
    ||||||    
T  44567 caaatt 44572  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 28904 - 28844
Alignment:
Q  274 ccgacacatataattatgccaaattatgcgattttctcaaattattaacgggatcggcgtg 334  Q
    ||||||||||||||||     |||||||||||||||| |||||||||||||  ||||||||    
T  28904 ccgacacatataattacattgaattatgcgattttcttaaattattaacggtgtcggcgtg 28844  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 68249 - 68297
Alignment:
Q  276 gacacatataattatgccaaattatgcgattttctcaaattattaacgg 324  Q
    ||||| ||||||||| | |||||||  ||||||||||||||||||||||    
T  68249 gacacctataattatactaaattatatgattttctcaaattattaacgg 68297  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 322
Target Start/End: Original strand, 33405389 - 33405437
Alignment:
Q  274 ccgacacatataattatgccaaattatgcgattttctcaaattattaac 322  Q
    ||||||||||||||||  | |||||||| | ||||||||||||||||||    
T  33405389 ccgacacatataattacactaaattatgtgtttttctcaaattattaac 33405437  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 39954288 - 39954344
Alignment:
Q  278 cacatataattatgccaaattatgcgattttctcaaattattaacgggatcggcgtg 334  Q
    ||||||||||||  | |||||||| |||||||||||||||||| |||  ||||||||    
T  39954288 cacatataattacactaaattatgtgattttctcaaattattagcggtgtcggcgtg 39954344  T

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