View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_32 (Length: 380)
Name: NF17288_low_32
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_32 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 380
Target Start/End: Original strand, 1440545 - 1440924
Alignment:
| Q |
13 |
aatatatctgtttatttaacatctgtaaataggtgtgtgcgtgtgcgcgggcgcgcacaagaatgcaagtaaacgagtgcttgatttcagcagaatttct |
112 |
Q |
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| T |
1440545 |
aatatatttgtttatttaacatctgtaaataggtgtgtgcgtgtgggtgggcgcgcaaaagaatgcaagtaaacgagtgcttggtttcagcagaatttct |
1440644 |
T |
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| Q |
113 |
ctttctttggtctgctactcctggtagtaagattctatttggattttctgtcataacttacacaggc------------aacggtgctctattacaaaga |
200 |
Q |
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| T |
1440645 |
ctttctttggtctgctactcccggtagtaagattctatttggattttctgtcgtaccttaaacaggctgctccaaaaggaacggtgctctattacaaaga |
1440744 |
T |
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| Q |
201 |
cagcaaaggaatcatctattgagtaatccctttgtgtcaacactcaacacggcctgaattttaacaatgacaaatactagaaggagtgcatttaagaggc |
300 |
Q |
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| T |
1440745 |
cagcaaaggaatcatctattgagtaatccctctgtgtcaacactcaacacgacctgaattttaacaatgacaaatactagaaggagtgcatttaagaggc |
1440844 |
T |
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| Q |
301 |
gaacatgatgcgaggggaacaattgaagggtaacactctattagatgatggtatgtttaaagatagcgattggtttaacc |
380 |
Q |
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| T |
1440845 |
gaacatgatgcgaggggaacaattgaagggtaacactctattagatgatcgtatgtttaaagacagtgattggtttaacc |
1440924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 349
Target Start/End: Original strand, 1453161 - 1453268
Alignment:
| Q |
244 |
tcaacacggcctgaattttaacaatgacaaatactagaaggagtgcatttaagaggcgaa--catgatgcgaggggaacaattgaagggtaacactctat |
341 |
Q |
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| T |
1453161 |
tcaacatgacctgaattttaacaatgacaaatacaagaagaagtgcagttaaaaggagaaacaaagatgtgaggggaacaattgaggagcaacacttttt |
1453260 |
T |
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| Q |
342 |
tagatgat |
349 |
Q |
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| T |
1453261 |
tagatgat |
1453268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 349
Target Start/End: Original strand, 1464853 - 1464960
Alignment:
| Q |
244 |
tcaacacggcctgaattttaacaatgacaaatactagaaggagtgcatttaagaggcgaa--catgatgcgaggggaacaattgaagggtaacactctat |
341 |
Q |
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| T |
1464853 |
tcaacatgacctgaattttaacaatgacaaatacaagaagaagtgcagttaaaaggagaaacaaagatgtgaggggaacaattgaggagcaacacttttt |
1464952 |
T |
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| Q |
342 |
tagatgat |
349 |
Q |
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| T |
1464953 |
tagatgat |
1464960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 41704446 - 41704491
Alignment:
| Q |
88 |
agtgcttgatttcagcagaatttctctttctttggtctgctactcc |
133 |
Q |
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| T |
41704446 |
agtgcttgatttcagcacaatttctctttccttggcctgcttctcc |
41704491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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