View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_35 (Length: 367)
Name: NF17288_low_35
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 43748731 - 43748387
Alignment:
| Q |
20 |
attctcatttgatcaacaccataaacccttctaggaaaatttgatatgagtctgtagttctcaattccagacaagcctaatgaatcgatatacgagaaaa |
119 |
Q |
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| T |
43748731 |
attctcatttgatcaacaccataaacccttctaggaaaatttgatatgagtctgtagttctcaattccagacaagcctaatgaatcgatatacgagaaaa |
43748632 |
T |
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| Q |
120 |
tagactgaattttgtccgtgcataggaaagtatgttctcttctttctccatttggaaaccttatgagtatctgcaacaaaaagtttgacaaac------a |
213 |
Q |
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| T |
43748631 |
tagactgaattttgtccgtgcataggaaagtatgttctcttctttctccatttggaaaccttatgagtatctgcaacaaaaagtttgacaaacatatata |
43748532 |
T |
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| Q |
214 |
tactcaagttcaacacaagttcataatttttgacatgtttctttgttgtgcaagacta-aatttattacctgtgcaacttgagtcgcattcccgctactt |
312 |
Q |
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| T |
43748531 |
tactcaagttcaacacaagttcataatttttgacatgtttctttgttgtgcaagactacaatttattacctgtgcaacttgagtcgcgttcccgctactt |
43748432 |
T |
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| Q |
313 |
gtgattcccttgccattcttttcaatagtggatccatttcctttg |
357 |
Q |
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| T |
43748431 |
gtgattcccttgccattcttttcaccagtggatccatttcctttg |
43748387 |
T |
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