View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_36 (Length: 362)
Name: NF17288_low_36
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 24078916 - 24079116
Alignment:
| Q |
15 |
ctgtgcaaaaataaaattgaatatttagctagaatgtatttaagatctgaaagtattaagtaacggaaagcttcctaatatgcattggttaccgaaggaa |
114 |
Q |
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| T |
24078916 |
ctgtgcaaaattaaaattgaatatttagctagaatgtatttaagatctgaaagtattaagtaatgaaaagcttccgaatatgcattggttaccaaaggaa |
24079015 |
T |
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| Q |
115 |
aactgctcaatatttagaagcaatcatcataatgcaatagctgaatcagatatcatataatataaaga-taatgagagaataaggtatgaatacaaaaca |
213 |
Q |
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| T |
24079016 |
aactactcaatatttagaagcaatcatcataatgcaatagctgaatcagatatcatataatataaagattaatgagagaataaagtatgaatacaaaaca |
24079115 |
T |
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| Q |
214 |
a |
214 |
Q |
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| T |
24079116 |
a |
24079116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 206 - 362
Target Start/End: Original strand, 24079131 - 24079284
Alignment:
| Q |
206 |
acaaaacaatgtaatacatggaagtggtagaatcaatgcaggtttaagttctaacaagatgcttagtttcaacactttttccgtattattattgcatcat |
305 |
Q |
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| T |
24079131 |
acaaaacaatgtaatacatggaagtggtagaatcaatgcaggtttaagttctaacaagatgcttagtttcaacactttttccg---tattattgcatcat |
24079227 |
T |
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| Q |
306 |
acagttgattcagatgaataagtgtcatttgacatgaaatacttacataggttggct |
362 |
Q |
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| T |
24079228 |
acagttgattcagatgaataagtgtcatttgacatgaaatacttacataggttggct |
24079284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 7893714 - 7893672
Alignment:
| Q |
294 |
ttattgcatcatacagttgattcagatgaataagtgtcatttg |
336 |
Q |
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| T |
7893714 |
ttattgcatcatacagttgattgacatgaataagtggcatttg |
7893672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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