View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_4 (Length: 715)
Name: NF17288_low_4
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 36282825 - 36282518
Alignment:
| Q |
18 |
atagtgggcggtggcggtttggcggtgctatagactagctatatgtaaaatgtaaagtaggagagnnnnnnnagttagttaggaaatgaagaggcatgta |
117 |
Q |
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| T |
36282825 |
atagtgggcggtggcggtttggcggtgctatagactagctatatgtaaaatgtaaagtaggagagtttttttaattagttaggaaatgaagaggcatgta |
36282726 |
T |
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| Q |
118 |
cacaaagaggaagaggattacaattctctcatgaaaattttgtcgacttttctccattttcaatctacatggttaaaatgctcctacgacttttcttagt |
217 |
Q |
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| T |
36282725 |
cacaaagaggaagaggattacaattctctcatgaaaattttgtcgacttttctccattttcaatctacatggttaaaatgctcctactacttttcttagt |
36282626 |
T |
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| Q |
218 |
aattcaactttagttttctctcatatgtttgaaggttgagatttcatttaagaaaaattgagagaacccaaattcttacaaagagatagattttttagag |
317 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36282625 |
aatttaactttagttttctctcatatgtttgaaggttgagatttcatttaagaaaaattgagagaatccaaattcttacaaagagatagattttttagag |
36282526 |
T |
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| Q |
318 |
gatgaagg |
325 |
Q |
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|||||||| |
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| T |
36282525 |
gatgaagg |
36282518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 392 - 705
Target Start/End: Complemental strand, 36282458 - 36282145
Alignment:
| Q |
392 |
gaacgcggacaaagtttattctcaacaaatgatttagattgcaaactaaaactcttttttaaattaagaagaatctagaacctgagttcaattttcaaat |
491 |
Q |
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| T |
36282458 |
gaacgcgggcaaagtttatcctcaacaattgatttagattgcaaactagaactcttctttaaactaagaagaatctggaacttgagttcaattttcaaat |
36282359 |
T |
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| Q |
492 |
ataataatcgtattaggataggagggagtaaagcgtcaatgtggtggaaggatttgtgtgattggtgcaggggagtcgggtggtgaggaaagttggttta |
591 |
Q |
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| T |
36282358 |
ataataatcgtattaggagaggagggagtaaagcgtcaatgtggtggaaggatttgtgtgcttggtgaaggggagtcaagtggtgagggaaattggttta |
36282259 |
T |
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| Q |
592 |
aagaagggattagttgcaatttggatgacgaagagactactttattctagaatgatccttgattggagggagggtgtttatgatgtaggtttagatgact |
691 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
36282258 |
aagaagggattagttgcaatttggatgacgaagaaactactttattctagaatgatccttgattggagggagggtgtttatggtgtaggtttacatgact |
36282159 |
T |
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| Q |
692 |
atttgagctctgtg |
705 |
Q |
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||||||||| |||| |
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| T |
36282158 |
atttgagctttgtg |
36282145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 45235079 - 45235027
Alignment:
| Q |
231 |
ttttctctcatatgtttgaaggttgagatttcatttaagaaaaattgagagaa |
283 |
Q |
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||||||||| ||||||||| ||||||||||||| || |||||| ||||||||| |
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| T |
45235079 |
ttttctctcttatgtttgatggttgagatttcacttgagaaaacttgagagaa |
45235027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 12906624 - 12906665
Alignment:
| Q |
242 |
atgtttgaaggttgagatttcatttaagaaaaattgagagaa |
283 |
Q |
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|||||||| |||||||||| |||||||||||| ||||||||| |
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| T |
12906624 |
atgtttgatggttgagattacatttaagaaaacttgagagaa |
12906665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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