View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_40 (Length: 343)
Name: NF17288_low_40
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 32184985 - 32184660
Alignment:
| Q |
19 |
agttgttcatgttgccatgttcccaagtgctggaatgggtcatctcacaccattcctaagactagcagcattgtttctcaacaacaattgcaaagtcact |
118 |
Q |
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| T |
32184985 |
agttgttcatgttgccatgtttccaagtgctggaatgggtcatctcacaccattcctaagactagcatcattgtttcttaacaacaattgcaaagtcact |
32184886 |
T |
|
| Q |
119 |
ctcatcactcctcttcccactgtctctcttgcagaatcccagcttcttgatcactttcactcttcttttcctcaag----------------tcatcttc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
32184885 |
ctcatcactcctcttcccactgtctctcttgcagaatcccagcttcttgatcactttcactcttctttccctcaagtcaacttcatcccatttcatcttc |
32184786 |
T |
|
| Q |
203 |
aaccttcttctcctgattctgttgttgatccttttttccatagagttcaaacccttcgcgacttcaccaaccttcttcctcctttgatctcttcactttc |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32184785 |
aaccttcttctcctgattctgttgttgatccttttttccatagagttcaaacccttcgcgactccaccaaccttcttcctcctttgatctcttcactttc |
32184686 |
T |
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| Q |
303 |
accacccatcactgttttcatctctg |
328 |
Q |
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|||||||||||||||||||||||||| |
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| T |
32184685 |
accacccatcactgttttcatctctg |
32184660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 32177824 - 32177648
Alignment:
| Q |
19 |
agttgttcatgttgccatgttcccaagtgctggaatgggtcatctcacaccattcctaagactagcagcattgtttctcaacaacaattgcaaagtcact |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32177824 |
agttgttcatgttgccatgttcccaagtgctggaatgggtcatctcacaccattcctaagactagcatcattgtttctcaacaacaattgcaaagtcact |
32177725 |
T |
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| Q |
119 |
ctcatcactcctcttcccactgtctctcttgcagaatcccagcttcttgatcactttcactcttcttttcctcaagt |
195 |
Q |
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||||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||| ||| |||||||| |
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| T |
32177724 |
ctcatcactcctcttcccactgtttctcttgcagaatcacaactccttgatcactttcactcttgtttccctcaagt |
32177648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 226 - 328
Target Start/End: Complemental strand, 32177595 - 32177493
Alignment:
| Q |
226 |
gttgatccttttttccatagagttcaaacccttcgcgacttcaccaaccttcttcctcctttgatctcttcactttcaccacccatcactgttttcatct |
325 |
Q |
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||||| |||||||||| | |||| |||||||||||| ||| |||| ||||||||||| | ||||||||||||||||||||||||||||||||||| |||| |
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| T |
32177595 |
gttgacccttttttccttcgagtccaaacccttcgcaactccacccaccttcttccttcattgatctcttcactttcaccacccatcactgtttttatct |
32177496 |
T |
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| Q |
326 |
ctg |
328 |
Q |
| |
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||| |
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| T |
32177495 |
ctg |
32177493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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