View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_43 (Length: 337)
Name: NF17288_low_43
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 33383666 - 33383981
Alignment:
| Q |
1 |
caagggaaccttttaaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtgggaaacaa |
100 |
Q |
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| T |
33383666 |
caagggaaccttt-aaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtgggaaacaa |
33383764 |
T |
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| Q |
101 |
gatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtggatcgac |
200 |
Q |
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| T |
33383765 |
gatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtggatcgac |
33383864 |
T |
|
| Q |
201 |
actggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaagtgttgtcgggacatccgcacatcatta |
300 |
Q |
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| T |
33383865 |
actggtgcctcacaccatatttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaaatgttgttgggacatccgcacatcatta |
33383964 |
T |
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| Q |
301 |
aagttgttggaattaga |
317 |
Q |
| |
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| T |
33383965 |
aagttgttggaattaga |
33383981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 33384797 - 33385112
Alignment:
| Q |
1 |
caagggaaccttttaaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtgggaaacaa |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33384797 |
caagggaaccttt-aaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtgggaaacaa |
33384895 |
T |
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| Q |
101 |
gatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtggatcgac |
200 |
Q |
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| T |
33384896 |
gatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtggatcgac |
33384995 |
T |
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| Q |
201 |
actggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaagtgttgtcgggacatccgcacatcatta |
300 |
Q |
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| T |
33384996 |
actggtgcctcacaccatatttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaaatgttgttgggacatccgcacatcatta |
33385095 |
T |
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| Q |
301 |
aagttgttggaattaga |
317 |
Q |
| |
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| T |
33385096 |
aagttgttggaattaga |
33385112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 33384233 - 33384548
Alignment:
| Q |
1 |
caagggaaccttttaaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtgggaaacaa |
100 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33384233 |
caagggaaccttt-aaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtgggaaacaa |
33384331 |
T |
|
| Q |
101 |
gatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtggatcgac |
200 |
Q |
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| T |
33384332 |
gatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtggatcgac |
33384431 |
T |
|
| Q |
201 |
actggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaagtgttgtcgggacatccgcacatcatta |
300 |
Q |
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| T |
33384432 |
actggtgcctcacaccatatttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaaatgttgttgggacatccacacatcatta |
33384531 |
T |
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| Q |
301 |
aagttgttggaattaga |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
33384532 |
aagttgttggaattaga |
33384548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 33090583 - 33090673
Alignment:
| Q |
162 |
atcaactatgttggtggatcaaattgttagtggatcgacactggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacataca |
252 |
Q |
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||||||| ||||||||||| || | | |||||| |||||||| ||||| | ||||||||||| ||| | |||||||||||| ||||||| |
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| T |
33090583 |
atcaacttagttggtggatctgatggatggtggatagacactggcgcctctcgccatgtttgttttgaccgtgctatgtttaagacataca |
33090673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 13583922 - 13584003
Alignment:
| Q |
171 |
gttggtggatcaaattgttagtggatcgacactggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacataca |
252 |
Q |
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||||||||||| || | | |||||| |||||||| ||||| | ||||||||||||||| | ||||||||| || ||||||| |
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| T |
13583922 |
gttggtggatctgatggatggtggatagacactggcgcctctcgccatgtttgttatgaccgtgctatgttcaagacataca |
13584003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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