View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_44 (Length: 336)
Name: NF17288_low_44
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 36354447 - 36354139
Alignment:
| Q |
13 |
cagagagacaacaacaaacctttgctctaagaacttggttactattatgcaactctacctcctgtatgtaatatatatgtacattttagttatcatactt |
112 |
Q |
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| T |
36354447 |
cagagagacaacaacaaacctttgctctaagaacttggttactattatgcaactctacctcctgtatgtaatatatatgtacattttagttatcatactt |
36354348 |
T |
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| Q |
113 |
tgaaaaacgttattatataaaatcttgtttgttatcatacaatacatgtcttcaaatatggaggttatttcattatgaaacaaatttattttggtgacga |
212 |
Q |
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| T |
36354347 |
tgaaaaacgttattatataaaatcttgtttgttatcatacaatacatgtcttcaaatatggaggttatttcattatgaaacaaatttattttggtgacga |
36354248 |
T |
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| Q |
213 |
ctaatatataatcaatagataagttgaaaaatataagttgaatataatcaatagatcttgttgtgaatattttatattatcgcctttttgaaccaatgac |
312 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36354247 |
ctaatgtataatcaatagataagttgaaaaatataacttgaatataatcaatagatcttgttgtgaatattttgtattatcgcctttttgaaccaatgac |
36354148 |
T |
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| Q |
313 |
taaccaatt |
321 |
Q |
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||||||||| |
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| T |
36354147 |
taaccaatt |
36354139 |
T |
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