View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_46 (Length: 325)
Name: NF17288_low_46
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 39341991 - 39341684
Alignment:
| Q |
1 |
taaaagttagacttcgtttgcttctactgttgagttgtcatttgaactttgaagacattttttgtgaaaacaattacaaaagtcacaagtcgtcatgttt |
100 |
Q |
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| T |
39341991 |
taaaagttagacttcgtttgcttctactgttgagttgtcatttgaactttgaagacattttttgtgaaaccaattacaaaagtcacaagtcgtcatgttt |
39341892 |
T |
|
| Q |
101 |
aagtttgatgtctcgttagttcaagtgggtttatgttgaataagtcaacaattgaaagccttataggctctagttgagggtatcattgagaaatatggta |
200 |
Q |
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| T |
39341891 |
aagtttgatgtctcgttagttcaagtgggtttatgttgaataagtcaacaattgaaagccttataggctctagttgagggtatcattgagaaatatggta |
39341792 |
T |
|
| Q |
201 |
taccattatgtaattcagatgatacttctgtcacttcatgtttgttgattttttccatgattagtgattgatgtttgcaacggtgttaggcatgatggta |
300 |
Q |
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| T |
39341791 |
taccattatgtaattcagatgatacttttgccacttcatgtttgttgattttttccatgattagtgattgatgtttgcaacggtgttaggcatgatggta |
39341692 |
T |
|
| Q |
301 |
acattaca |
308 |
Q |
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|||||||| |
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| T |
39341691 |
acattaca |
39341684 |
T |
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