View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_47 (Length: 322)
Name: NF17288_low_47
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 18220560 - 18220267
Alignment:
| Q |
14 |
gagcagagatcagaagcacgaaagtatattggtgacacaggtttacttgatcatttgctgaaacacatggctggaaaagtggcaccaggaggagttgaaa |
113 |
Q |
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| T |
18220560 |
gagctgagatcagaagcacgaaagtatattggtgacacaggtttacttgatcatttgctgaaacacatggctggaaaagtggcaccaggaggagttgaaa |
18220461 |
T |
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| Q |
114 |
gattcagacggaaacacaatgccgaaggttcaatggaatactggttagagagtgctgatcttgctgatattagaaaggaattgggtgttcaagatcctta |
213 |
Q |
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| T |
18220460 |
gattcagacggaaacacaatgccgaaggttcaatggaatactggttagagagtgctgatcttgctgatattagaaaggaattgggtgttcaagatcctta |
18220361 |
T |
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| Q |
214 |
ctggactcctccccctggttggaagcctggtgacagcatttcaccagaaaatgttacgagtcatgaactcagagagataaaggaggaaataatt |
307 |
Q |
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| T |
18220360 |
ctggactcctccccctggttggaagcctggtgacagcatttcaccagaaaatgttactagtcatgaactcagagagataaaggaggaaataatt |
18220267 |
T |
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Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 43012330 - 43012043
Alignment:
| Q |
20 |
agatcagaagcacgaaagtatattggtgacacaggtttacttgatcatttgctgaaacacatggctggaaaagtggcaccaggaggagttgaaagattca |
119 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43012330 |
agatcagaagcaagaaagtatattggtgacacaggtttacttgatcatttgttgaaacacatggctggaaaagtggcaccaggaggagttgatagattca |
43012231 |
T |
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| Q |
120 |
gacggaaacacaatgccgaaggttcaatggaatactggttagagagtgctgatcttgctgatattagaaaggaattgggtgttcaagatccttactggac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| || |||||||| |
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| T |
43012230 |
gacggaaacacaatgccgaaggttcaatggaatactggttagagagtgctgatcttgctgatcttagaaaggaattggg---tcaagacccctactggac |
43012134 |
T |
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| Q |
220 |
tcctccccctggttggaagcctggtgacagcatttcaccagaaaatgttacgagtcatgaactcagagag---ataaaggaggaaataatt |
307 |
Q |
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|||||||||||| ||||||||||| ||||||||| |||||||| ||||||| ||| |||||||||||||| |||||||||||||||||| |
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| T |
43012133 |
tcctccccctggctggaagcctggagacagcattgcaccagaatatgttactagtaatgaactcagagagatcataaaggaggaaataatt |
43012043 |
T |
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