View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17288_low_48 (Length: 319)

Name: NF17288_low_48
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17288_low_48
NF17288_low_48
[»] chr3 (1 HSPs)
chr3 (13-302)||(49913859-49914148)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 302
Target Start/End: Complemental strand, 49914148 - 49913859
Alignment:
Q  13 aatatacgagtcagccacctgcatttaaaattacctaattataatgaacaatccgcagctaaaaatagggttaaataaccaatctaataatagccgtcat 112  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  49914148 aatatacgagtcagccacctgcatttaaaattacataattataatgaacaatccgcagctaaaaatagggttaaataaccaatctaataatagctgtcat 49914049  T
Q  113 tacctcacggagtgttgcttgctcctcaggggttatgcctttggaaataaaatgtgaaacctgccatacaaagaaactttgtaactattcatagcccaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49914048 tacctcacggagtgttgcttgctcctcaggggttatgcctttggaaataaaatgtgaaacctgccatacaaagaaactttgtaactattcatagcccaaa 49913949  T
Q  213 aagaaaattaagtgtacagcaagttttcatcacatacacagctctctatcagtaattggtaaatattcaaatgaaaaagcaagtggcttc 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  49913948 aagaaaattaagtgtacagcaagttttcatcacatacacagctctctatcagtaattggtaaatattcaaatcaaaaagcaagtggcttc 49913859  T

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