View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_49 (Length: 318)
Name: NF17288_low_49
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_49 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 37253802 - 37254102
Alignment:
| Q |
18 |
gcacatcgtacatcaatctattgcgagctcggtggatcaaggacacatcaggttgttcttcatgggataattttcttccatatttttgccatggctctgc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37253802 |
gcacatcgtacatcaatctattgcgagctcggtggatcaaggacacatcaggttgttcttcatgggataatcttcttccatatttttgccatggctctgc |
37253901 |
T |
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| Q |
118 |
gacaataattcaatttctgcaagcgcataacttggcaactgatggtgatccaacaccaaatctgcatgtttgcagggaacaataaggaataagacattnn |
217 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37253902 |
aacaataattcaatttctgccggcgcataactttgcaactgatggtgatccaacaccaaatctgcatgtttgcagggaacaataaggaataagatattaa |
37254001 |
T |
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| Q |
218 |
nnnnnntcaccatataaattataaacatgaacaaagcttcataatataaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataa |
317 |
Q |
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| T |
37254002 |
aaaaaatcaccatataaattataaacatgaacaaagcttcataatataaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataa |
37254101 |
T |
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| Q |
318 |
g |
318 |
Q |
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| T |
37254102 |
g |
37254102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 45091368 - 45091069
Alignment:
| Q |
18 |
gcacatcgtacatcaatctattgcgagctcggtggatcaaggacacatcaggttgttcttcatgggataattttcttccatatttttgccatggctctgc |
117 |
Q |
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| T |
45091368 |
gcacatcgtacatcaatctattgcgagcttggtggatcaagga-acatcatgttgttcttcatgagataattttcttccatatttttgccatggctctgc |
45091270 |
T |
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| Q |
118 |
gacaataattcaatttctgcaagcgcataacttggcaactgatggtgatccaacaccaaatctgcatgtttgcagggaacaataaggaataagacattnn |
217 |
Q |
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| T |
45091269 |
aacaataattcaatttccgccagcgcataactttgcaactgatggtgatccaacaccaaatctgcatgtttgcagggaacaataaggaataagacattaa |
45091170 |
T |
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| Q |
218 |
nnnnnntcaccatataaattataaacatgaacaaagcttcataatataaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataa |
317 |
Q |
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| T |
45091169 |
aaaaaatcaccatataaattataaacatgaacaaagcttcataatataaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataa |
45091070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 11073324 - 11073624
Alignment:
| Q |
18 |
gcacatcgtacatcaatctattgcgagctcggtggatcaaggacacatcaggttgttcttcatgggataattttcttccatatttttgccatggctctgc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
11073324 |
gcacatcgtacatcaatctattgcgagctcggtggatcaaggacacatcaggttgttcttcatgggataatcttcttccatatttttaccatggctctgc |
11073423 |
T |
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| Q |
118 |
gacaataattcaatttctgcaagcgcataacttggcaactgatggtgatccaacaccaaatctgcatgtttgcagggaacaataaggaataagacattnn |
217 |
Q |
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||||||||||||||||| | |||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11073424 |
aacaataattcaatttcttccagcgcataactttgcaactaatggtgatccaacaccaaatcttcatgtttgcagggaacaataaggaataagacattaa |
11073523 |
T |
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| Q |
218 |
nnnnnntcaccatataaattataaacatgaacaaagcttcataatataaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataa |
317 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
11073524 |
aaaaaatcaccatataaattatatacatgaacaaagcttcataatataaatcagatcagtttcatattgaggggcagcacggtccgctatcatcctataa |
11073623 |
T |
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| Q |
318 |
g |
318 |
Q |
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| T |
11073624 |
g |
11073624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 17961299 - 17961369
Alignment:
| Q |
248 |
acaaagcttcataatataaatcagatcagtttcatattgagtggcagcacggtctgctatcatcctataag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
17961299 |
acaaagcttcataatataaatcagatcagtttcatattgagtagcagcacggtctgctatcatcctataag |
17961369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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