View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_5 (Length: 673)
Name: NF17288_low_5
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_5 |
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| [»] scaffold0157 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 395
Target Start/End: Complemental strand, 12465172 - 12464791
Alignment:
| Q |
13 |
aatatttcattt-atttttctaattaaaattattttctagaagaaaattcctaacacgtannnnnnnnnnncatcttatagaaaaagcatgattgggaaa |
111 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| |
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| T |
12465172 |
aatatttcattttatttttataattaaaattattttctagaagaaaattcctaacacat---tttttttttcatcttatagaaaaagtatgattgggaaa |
12465076 |
T |
|
| Q |
112 |
acgatgattcaggagctgcttcaagaggagattggtggaaaggtatcatttgacaatgtttgataaatatatttgttctctaaaattttgcatatggctg |
211 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12465075 |
acgatgattcaggagttgcttcaagaggagattggtggaaaggtatcctttgacaatgtttgataaatatatttgttctctaaaattttgcatatggctg |
12464976 |
T |
|
| Q |
212 |
gaactagagtgacctaacattctcattgttttgttgtcttgttaattttccatcaccaacagggggtctttattattaaaatcacaactaccaacaattg |
311 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12464975 |
gaactagagtggcctaacattctcattgttttgttgtcttgttaattttccatcaccaacagggggtctttattattaaaatcacaactaccaacaattg |
12464876 |
T |
|
| Q |
312 |
tcatatgcttcacaaggta-ttaggttatttttaaactcatatatagtaaaagagtatttttaaattgagtttgattatgtggtg |
395 |
Q |
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| T |
12464875 |
tcatatgcttcacaaggtatttagattatttttaaactcatatatagtaaaatagtatttttaaattaggtttgattatgtggtg |
12464791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 84 - 395
Target Start/End: Complemental strand, 12483800 - 12483483
Alignment:
| Q |
84 |
atcttatagaaaaagcatgattgggaaaacgatgattcaggagctgcttcaagaggagattggtggaaaggtatcatttgacaatgtttgataaatatat |
183 |
Q |
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|||||||||| |||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| | ||| |||| |||||| |||||| |
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| T |
12483800 |
atcttatagacaaagtatgattgggaaaacaatgattcagaagttgcttcaagaggagattggtggaaaggtatcttatgataatgcttgatatatatat |
12483701 |
T |
|
| Q |
184 |
---------ttgttctctaaaattttgcatatggctggaactagagtgacctaacattctcattgttttgttgtcttgttaattttccatcaccaacagg |
274 |
Q |
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|||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||| | |
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| T |
12483700 |
atatatatattgttctctaaacttttgcatatgaatggaactagagtggcctaacattctcattattttattgtcttgttaattttccatcaccaacaag |
12483601 |
T |
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| Q |
275 |
gggtctttattattaaaatcacaactaccaacaattgtcatatgcttcacaaggta-ttaggttatttttaaactcatatatagtaaaagagtattttta |
373 |
Q |
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|||||||||||||||| ||||||||| | ||||||| |||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
12483600 |
gggtctttattattaatatcacaactgcagacaattgacatatgcttctcaaggtatttaggttatttttaaactc----atagtaaaagagtattttta |
12483505 |
T |
|
| Q |
374 |
aattgagtttgattatgtggtg |
395 |
Q |
| |
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||||| |||||||||||||||| |
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| T |
12483504 |
aattgtgtttgattatgtggtg |
12483483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 482 - 656
Target Start/End: Complemental strand, 12464705 - 12464531
Alignment:
| Q |
482 |
catacaatgatgtgtacttttgtgaagagattcactataagtaagaagggtatatatgtgcagtgcagtctaatatgagttgtagaagtgtcaagtgagt |
581 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
12464705 |
catacaatgatgtgtacttttgtgaagagattcactataagtaagaagggtatatatgtgcagtgtagtctaatgtgagttgtagaagtgtcaagtgagt |
12464606 |
T |
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| Q |
582 |
atgcatgtgtattttgtatctaaatgtatgatatgtgacgtgtgcaaattttctatctgaattgtgtcttctttt |
656 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||| ||||||| |
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| T |
12464605 |
atgcatgtgtattttgtatctaaatgtatgatatgtgacttgtgcaaatttcctatatgaattgtgttttctttt |
12464531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 12483872 - 12483820
Alignment:
| Q |
14 |
atatttcattt-atttttctaattaaaattattttctagaagaaaattcctaa |
65 |
Q |
| |
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||||||||||| |||||| |||||||||||||||||||| || |||||||||| |
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| T |
12483872 |
atatttcattttatttttataattaaaattattttctagtagcaaattcctaa |
12483820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 169; Significance: 3e-90; HSPs: 2)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 84 - 395
Target Start/End: Original strand, 36677 - 36994
Alignment:
| Q |
84 |
atcttatagaaaaagcatgattgggaaaacgatgattcaggagctgcttcaagaggagattggtggaaaggtatcatttgacaatgtttgataaatatat |
183 |
Q |
| |
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|||||||||| |||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| | ||| |||| |||||| |||||| |
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| T |
36677 |
atcttatagacaaagtatgattgggaaaacaatgattcagaagttgcttcaagaggagattggtggaaaggtatcttatgataatgcttgatatatatat |
36776 |
T |
|
| Q |
184 |
---------ttgttctctaaaattttgcatatggctggaactagagtgacctaacattctcattgttttgttgtcttgttaattttccatcaccaacagg |
274 |
Q |
| |
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|||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||| | |
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| T |
36777 |
atatatatattgttctctaaacttttgcatatgaatggaactagagtggcctaacattctcattattttattgtcttgttaattttccatcaccaacaag |
36876 |
T |
|
| Q |
275 |
gggtctttattattaaaatcacaactaccaacaattgtcatatgcttcacaaggta-ttaggttatttttaaactcatatatagtaaaagagtattttta |
373 |
Q |
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|||||||||||||||| ||||||||| | ||||||| |||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
36877 |
gggtctttattattaatatcacaactgcagacaattgacatatgcttctcaaggtatttaggttatttttaaactc----atagtaaaagagtattttta |
36972 |
T |
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| Q |
374 |
aattgagtttgattatgtggtg |
395 |
Q |
| |
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||||| |||||||||||||||| |
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| T |
36973 |
aattgtgtttgattatgtggtg |
36994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 36605 - 36657
Alignment:
| Q |
14 |
atatttcattt-atttttctaattaaaattattttctagaagaaaattcctaa |
65 |
Q |
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||||||||||| |||||| |||||||||||||||||||| || |||||||||| |
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| T |
36605 |
atatttcattttatttttataattaaaattattttctagtagcaaattcctaa |
36657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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