View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17288_low_50 (Length: 313)

Name: NF17288_low_50
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17288_low_50
NF17288_low_50
[»] chr5 (1 HSPs)
chr5 (11-297)||(39342035-39342327)


Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 39342035 - 39342327
Alignment:
Q  11 cacagaccggtctatatgataagagagaataaaagcaacgggtgagccacagattcctgcacttaactggactgtgcagaaacttaaacaaatcaacatg 110  Q
    ||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39342035 cacaggccggtctatatgataagagagaataaa-gcaacaggtgagccacagattcctgcacttaactggactgtgcagaaacttaaacaaatctacatg 39342133  T
Q  111 cgtaattga-------agttaaaactttactttcatgacactaattctttcatgttatatacgatgtccatttcacaaaccaaaaagttcaagacagcat 203  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39342134 cgtaattgatattaaaagttaaaactttactttcatgacactaattctttcatgttatatacgatgtccatttcacaaaccaaaaagttcaagacagcat 39342233  T
Q  204 tcccactcaaggttttaaaaaacgatctgcaaccgcaattgtggccgcaacatcaaggtttttaagcctctacaaccacattcaggctgcattg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39342234 tcccactcaaggttttaaaaaacgatctgcaaccgcaattgtggccgcaacatcaaggtttttaagcctctacaaccacattcaggctgcattg 39342327  T

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