View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_52 (Length: 309)
Name: NF17288_low_52
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 48367725 - 48368006
Alignment:
| Q |
18 |
taagcaactggtatggtttgataccggagctttttccgaatgcaaagtacatttatggcattatgacaggttctatggaaccatatttggtaaaactgag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48367725 |
taagcaactggtatggtttgataccggagctttttccgaatgcaaagtacatttatggcattatgacaggttctatggaaccatatttggtaaaactgag |
48367824 |
T |
|
| Q |
118 |
gcactatgcaggggtgctacctttgtgtactgctgactatggagcttctgaagggtggattgctgcaaatgttaacccaaaaattccacctgaattggca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48367825 |
gcactatgcaggggtgctacctttgtgtactgctgactatggagcttctgaagggtggattgctgcaaatgttaacccaaaaattccacctgaattggca |
48367924 |
T |
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| Q |
218 |
acttatgccgtgcttcctcaaattggttactttgagttcattcctctcacacagcttgagaatgaaaatactttcctctgtg |
299 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48367925 |
acttacgccgtgcttcctcaaattggttactttgagttcattcctctcacacagcttgagaatgaaaatactttcctttgtg |
48368006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 282
Target Start/End: Complemental strand, 13979878 - 13979622
Alignment:
| Q |
26 |
tggtatggtttgataccggagctttttccgaatgcaaagtacatttatggcattatgacaggttctatggaaccatatttggtaaaactgaggcactatg |
125 |
Q |
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|||||||||||| |||| ||| | ||||| ||||| |||||||||||||| || ||||| || || ||||| |||||||| | ||| |||||||||||| |
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| T |
13979878 |
tggtatggtttgttaccagagttgtttcctaatgcgaagtacatttatggaatcatgacggggtcgatggagccatatttaggaaagttgaggcactatg |
13979779 |
T |
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| Q |
126 |
caggggtgctaccttt-gtgtactgctgactatggagcttctgaagggtggattgctgcaaatgttaacccaaaaattccacctgaattggcaacttatg |
224 |
Q |
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| T |
13979778 |
caggagagttacctttagtg-acttctatctatggagcttctgaagggttcatagctgcaaatattaaccctaaacttccccttgaattggcaacctatg |
13979680 |
T |
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| Q |
225 |
ccgtgcttcctcaaattggttactttgagttcattcctctcacacagcttgagaatga |
282 |
Q |
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| T |
13979679 |
ttttgtttcctcaaaatggatactttgagttcattcctctcacacaggttaagaatga |
13979622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 10272783 - 10272541
Alignment:
| Q |
20 |
agcaactggtatggtttgataccggagctttttccgaatgcaaagtacatttatggcattatgacaggttctatggaaccatatttggtaaaactgaggc |
119 |
Q |
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| T |
10272783 |
agcaattggtatggattgataccggagcttttccctaatgctaagtatcttctagggatcatgacaggttcaatggaacattacttgaaaaagttgagac |
10272684 |
T |
|
| Q |
120 |
actatgcaggggtgctacctttgtgtactgctgactatggagcttctgaagggtggattgctgcaaatgttaacccaaaaattccacctgaattggcaac |
219 |
Q |
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| T |
10272683 |
actatgcaggagaggttcctttggtgacttctgagtatggctcttctgaaggttggattgcttcaaatgtgaatcctaaagtggctcctgagtttgctac |
10272584 |
T |
|
| Q |
220 |
ttatgccgtgcttcctcaaattggttactttgagttcattcct |
262 |
Q |
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| T |
10272583 |
ttatgttgttcttcctcaaattgcttactttgaattcattcct |
10272541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 262
Target Start/End: Complemental strand, 10265080 - 10264844
Alignment:
| Q |
26 |
tggtatggtttgataccggagctttttccgaatgcaaagtacatttatggcattatgacaggttctatggaaccatatttggtaaaactgaggcactatg |
125 |
Q |
| |
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|||||||| |||||||| || |||||||| |||| ||||| || || || ||||||||||| ||||||| || ||| ||| |||| ||||||| |
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| T |
10265080 |
tggtatggattgataccagaactttttcctaatgttaagtatgttctaggaatcatgacaggttcaatggaacattacttgaaaaagttgagacactatg |
10264981 |
T |
|
| Q |
126 |
caggggtgctacctttgtgtactgctgactatggagcttctgaagggtggattgctgcaaatgttaacccaaaaattccacctgaattggcaacttatgc |
225 |
Q |
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|||| | | | ||||||| ||| |||| ||||| ||||||||||| ||||||||| ||||||| || || ||| | | ||||| || || ||||||| |
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| T |
10264980 |
caggagaggttcctttgttgacttctgaatatggtgcttctgaaggttggattgcttcaaatgtgaatcctaaagtggctcctgagtttgctacttatgt |
10264881 |
T |
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| Q |
226 |
cgtgcttcctcaaattggttactttgagttcattcct |
262 |
Q |
| |
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|| ||||||||||||| ||||||||| ||||||||| |
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| T |
10264880 |
tgttcttcctcaaattgcttactttgaattcattcct |
10264844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 10284027 - 10283783
Alignment:
| Q |
18 |
taagcaactggtatggtttgataccggagctttttccgaatgcaaagtacatttatggcattatgacaggttctatggaaccatatttggtaaaactgag |
117 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| ||||| ||||| || || || ||||||||| | |||||||| ||| || ||| ||||| |
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| T |
10284027 |
taagcaactggtatggattgataccagagctttttccaaatgctaagtatgttctagggatcatgacaggtgcaatggaaccttatatgaaaaagctgag |
10283928 |
T |
|
| Q |
118 |
gcactatgcaggggtgctacctttgtgtactgctgactatggagcttctgaagggtggattgctgcaaatgttaacccaaaaattccacctgaattggca |
217 |
Q |
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|| |||||||| | | ||||||| ||| |||| ||||| ||||||||||| ||||||| | ||||| | || || ||| | | ||||| || || |
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| T |
10283927 |
acattatgcaggagaagttcctttgttaacttctgattatggtgcttctgaaggttggattggttcaaatttgaatcctaaagtggctcctgagtttgct |
10283828 |
T |
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| Q |
218 |
acttatgccgtgcttcctcaaattggttactttgagttcattcct |
262 |
Q |
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|||||||| | ||||||||||||| |||||| || ||||||||| |
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| T |
10283827 |
acttatgctattcttcctcaaattgcttacttcgaattcattcct |
10283783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 262
Target Start/End: Complemental strand, 10243201 - 10242959
Alignment:
| Q |
20 |
agcaactggtatggtttgataccggagctttttccgaatgcaaagtacatttatggcattatgacaggttctatggaaccatatttggtaaaactgaggc |
119 |
Q |
| |
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||||| |||||||| ||||||| ||||||||||| |||| ||||| || | || || ||||| ||| | |||||||| ||| || ||| |||| | |
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| T |
10243201 |
agcaattggtatggactgataccagagctttttcctaatgttaagtatgttcaagggatcatgactggtgcaatggaaccttatgtgaaaaagttgagac |
10243102 |
T |
|
| Q |
120 |
actatgcaggggtgctacctttgtgtactgctgactatggagcttctgaagggtggattgctgcaaatgttaacccaaaaattccacctgaattggcaac |
219 |
Q |
| |
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|||||||||| | | | ||||||| ||| |||| ||||| |||||||||| ||||||||| ||||||| || || ||| | | ||||| || || || |
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| T |
10243101 |
actatgcaggagaggttcctttgttgacttctgagtatggctcttctgaaggttggattgcttcaaatgtgaatcctaaagtggctcctgagtttgctac |
10243002 |
T |
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| Q |
220 |
ttatgccgtgcttcctcaaattggttactttgagttcattcct |
262 |
Q |
| |
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||||| || ||||||||||||| ||||||||| ||||||||| |
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| T |
10243001 |
ttatgttgttcttcctcaaattgcttactttgaattcattcct |
10242959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 18045603 - 18045487
Alignment:
| Q |
158 |
ggagcttctgaagggtggattgctgcaaatgttaacccaaaaattccacctgaattggcaacttatgccgtgcttcctcaaattggttactttgagttca |
257 |
Q |
| |
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|||||||||||||||| || ||||||||||||||||| ||| |||| |||||||| ||||||||||||||| ||||||||| ||| ||||||||||||| |
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| T |
18045603 |
ggagcttctgaagggttcatagctgcaaatgttaaccctaaacttccccctgaatttgcaacttatgccgtgtttcctcaaaatggatactttgagttca |
18045504 |
T |
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| Q |
258 |
ttcctctcacacagctt |
274 |
Q |
| |
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|||||||||| |||||| |
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|
| T |
18045503 |
ttcctctcactcagctt |
18045487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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