View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17288_low_53 (Length: 304)

Name: NF17288_low_53
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17288_low_53
NF17288_low_53
[»] chr2 (2 HSPs)
chr2 (45-298)||(8360707-8360955)
chr2 (45-298)||(38412375-38412624)
[»] chr1 (1 HSPs)
chr1 (45-298)||(34612022-34612271)
[»] chr4 (1 HSPs)
chr4 (45-298)||(26908692-26908941)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 45 - 298
Target Start/End: Original strand, 8360707 - 8360955
Alignment:
Q  45 aattcttcatgggaatcgatttttattatctaaatgggattaataaaaataaactatatatctgaagtattgtttgctttttgtttctgtcaagcaacca 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    |||||||||||||||||||||||||||||||| |||    
T  8360707 aattcttcatgggaatcgatttttattatctaaatgggattaataaaaataaactatcta----aagtattgtttgctttttgtttctgtcaagcagcca 8360802  T
Q  145 gccaagagattatacaaggcaaaagtaaaaaattaggtcaacatatatgaattgaatgttacgtacttttcgtaaaacaattttgagcaactagacattg 244  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8360803 gccaagagattacacaaggcaaaagtaaaaaattaggtcaacatatatgaattgaatgttacgtacttttcgtaaaacaattttgagcaactagacattg 8360902  T
Q  245 aacaagaagaaaataaatgaaaggctcaaaacgaaatagtgatgatgatgtcca 298  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  8360903 aacaagaag-aaataaatgaaaggctcaaaacgaaatagtgatgatgaagtcca 8360955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 45 - 298
Target Start/End: Original strand, 38412375 - 38412624
Alignment:
Q  45 aattcttcatgggaatcgatttttattatctaaatgggattaataaaaataaactatatatctgaagtattgtttgctttttgtttctgtcaagcaacca 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||| |||    
T  38412375 aattcttcatgggaatcgatttttattatctaaatgggattaataaaaataaa----atatctgaagtattgtttgctttttgtttctgtcaagcagcca 38412470  T
Q  145 gccaagagattatacaaggcaaaagtaaaaaattaggtcaacatatatgaattgaatgttacgtacttttcgtaaaacaattttgagcaactagacattg 244  Q
    |||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38412471 gccaagagattacacaaggcaaaagtaaaaaattaagccaacatatatgaattgaatgttatgtacttttcgtaaaacaattttgagcaactagacattg 38412570  T
Q  245 aacaagaagaaaataaatgaaaggctcaaaacgaaatagtgatgatgatgtcca 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38412571 aacaagaagaaaataaatgaaaggctcaaaacgaaatagtgatgatgaagtcca 38412624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 45 - 298
Target Start/End: Complemental strand, 34612271 - 34612022
Alignment:
Q  45 aattcttcatgggaatcgatttttattatctaaatgggattaataaaaataaactatatatctgaagtattgtttgctttttgtttctgtcaagcaacca 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||| |||    
T  34612271 aattcttcatgggaatcgatttttattatctaaatgggattaataaaaataaa----atatctgaagtattgtttgctttttgtttctgtcaagcagcca 34612176  T
Q  145 gccaagagattatacaaggcaaaagtaaaaaattaggtcaacatatatgaattgaatgttacgtacttttcgtaaaacaattttgagcaactagacattg 244  Q
    |||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34612175 gccaagagattacacaaggcaaaagtaaaaaattaagccaacatatatgaattgaatgttatgtacttttcgtaaaacaattttgagcaactagacattg 34612076  T
Q  245 aacaagaagaaaataaatgaaaggctcaaaacgaaatagtgatgatgatgtcca 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34612075 aacaagaagaaaataaatgaaaggctcaaaacgaaatagtgatgatgaagtcca 34612022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 45 - 298
Target Start/End: Original strand, 26908692 - 26908941
Alignment:
Q  45 aattcttcatgggaatcgatttttattatctaaatgggattaataaaaataaactatatatctgaagtattgtttgctttttgtttctgtcaagcaacca 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||| |||    
T  26908692 aattcttcatgggaatcgatttttattatctaaatgggattaataaaaataaa----atatctgaagtattgtttgctttttgtttctgtcaagcagcca 26908787  T
Q  145 gccaagagattatacaaggcaaaagtaaaaaattaggtcaacatatatgaattgaatgttacgtacttttcgtaaaacaattttgagcaactagacattg 244  Q
    |||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26908788 gccaagagattacacaaggcaatagtaaaaaattaagccaacatatatgaattgaatgttatgtacttttcgtaaaacaattttgagcaactagacattg 26908887  T
Q  245 aacaagaagaaaataaatgaaaggctcaaaacgaaatagtgatgatgatgtcca 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26908888 aacaagaagaaaataaatgaaaggctcaaaacgaaatagtgatgatgaagtcca 26908941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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