View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_54 (Length: 293)
Name: NF17288_low_54
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 145631 - 145907
Alignment:
| Q |
1 |
cttgtaagtattatttatataagtttctttacaattttaaattggattaatactaaaataatttattttgaatatgtagcgtctccctcatcaccttaca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
145631 |
cttgtaagtattatttatataagtttctttacaattttaaattggattaattctaaaataatttattttgaatatgtagcgtctccctcatcaccttaca |
145730 |
T |
|
| Q |
101 |
tatgaaggtgttttgagttctgataagaacatcatgctcactcaacttgatagagatcaagatgcagttgatgcatttggttgtgaggttgttgctgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
145731 |
tatgaaggtgttttgagttctgataagaacatcatgctcactcaacttgatagagatcaagatgcagttgatgcatttggttgtgaggttgttgctgatg |
145830 |
T |
|
| Q |
201 |
aagaagatcctcataagagatacatagttagtggttggcatgcatttgttaaggcaagtaaagttgaagttggtgat |
277 |
Q |
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||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
145831 |
aagtagatcctcataagagatacatagctagtggttggcatgcatttgttaaggcaagtcaagttgaagttggtgat |
145907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 19784662 - 19784387
Alignment:
| Q |
1 |
cttgtaagtattatttatataagtttctttacaattttaaattggattaatactaaaataatttattttgaatatgtagcgtctccctcatcaccttaca |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||| | |||||| |||| |||||||| | ||| | ||||||||||| ||||||||||| ||| |||||| |
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| T |
19784662 |
cttgtaagtgttatttatataagtttcttggctattttatattgcattaatacaagcata--tccttttgaatatgcagcgtctccctgctcatcttaca |
19784565 |
T |
|
| Q |
101 |
tatgaaggtgttttgagttctgataagaacatc-atgctcactcaacttgatagagatcaagatgcagttgatgcatttggttgtgaggttgttgctgat |
199 |
Q |
| |
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||||||||| ||||||| | ||| |||||||| ||||| |||||| ||||| |||||||||||||||||||||||||| ||||||||| || |||| |
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| T |
19784564 |
tatgaaggtattttgagctttgagaagaacatttatgctgactcaaattgatcgagatcaagatgcagttgatgcatttaactgtgaggtttttactgaa |
19784465 |
T |
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| Q |
200 |
gaagaagatcctcataagagatacatagttagtggttggcatgcatttgttaaggcaagtaaagttgaagttggtgat |
277 |
Q |
| |
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|||| ||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19784464 |
gaaggagatccttataagagatacatatctagtagttggcatgcatttgttaaggcaagccaagttgaagttggtgat |
19784387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 21650532 - 21650806
Alignment:
| Q |
1 |
cttgtaagtattatttatataagtttctttacaattttaaattggattaatactaaaataatttattttgaatatgtagcgtctccctcatcaccttaca |
100 |
Q |
| |
|
||||||||| |||||| ||||| |||||| | |||||| |||| |||||||| | ||| | |||||||||||| ||||||||||| ||| |||||| |
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|
| T |
21650532 |
cttgtaagtgttatttttataaatttcttggctattttatattgcattaatacaagcata--tcattttgaatatgcagcgtctccctgctcatcttaca |
21650629 |
T |
|
| Q |
101 |
tatgaaggtgttttgagttctgataagaacatcatgctcactcaacttgatagagatcaagatgcagttgatgcatttggttgtgaggttgttgctgatg |
200 |
Q |
| |
|
||||||||| ||||||| ||||| |||||||| ||||| |||||| ||||| |||||| ||||||||| ||| ||||| || |||||| | |||| | |
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| T |
21650630 |
tatgaaggtattttgagctctgagaagaacattatgctaactcaaattgatcgagatcgagatgcagtggattcatttaactgcgaggttttgactgaag |
21650729 |
T |
|
| Q |
201 |
aagaagatcctcataagagatacatagttagtggttggcatgcatttgttaaggcaagtaaagttgaagttggtgat |
277 |
Q |
| |
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||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
21650730 |
aaggagatccttataagagatacatatatagtggttggcatgcatttgttaaggcaagccaagttgaagttggtgat |
21650806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 14572695 - 14572421
Alignment:
| Q |
1 |
cttgtaagtattatttatataagtttctttacaattttaaattggattaatactaaaataatttattttgaatatgtagcgtctccctcatcaccttaca |
100 |
Q |
| |
|
||||||||| |||||| ||||| |||||| | |||||| |||| |||||||| | ||| | |||||||||||| ||||||||||| ||| |||||| |
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| T |
14572695 |
cttgtaagtgttatttttataaatttcttggctattttatattgcattaatacaagcata--tcattttgaatatgcagcgtctccctactcatcttaca |
14572598 |
T |
|
| Q |
101 |
tatgaaggtgttttgagttctgataagaacatcatgctcactcaacttgatagagatcaagatgcagttgatgcatttggttgtgaggttgttgctgatg |
200 |
Q |
| |
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||||||||| ||||||| ||||| |||||||| ||||| |||||| ||||| |||||| ||||||||| ||| ||||| | ||| || | |||| | |
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| T |
14572597 |
tatgaaggtattttgagctctgagaagaacattatgctgactcaaattgatcgagatcgagatgcagtggattcatttaactacgagattttgactgaag |
14572498 |
T |
|
| Q |
201 |
aagaagatcctcataagagatacatagttagtggttggcatgcatttgttaaggcaagtaaagttgaagttggtgat |
277 |
Q |
| |
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||| ||||||| |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
14572497 |
aaggagatccttataagagatacatatctagtggtgtgcatgcatttgttaaggcaagccaagttgaagttggtgat |
14572421 |
T |
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