View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_55 (Length: 291)
Name: NF17288_low_55
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 34980324 - 34980260
Alignment:
| Q |
1 |
catgttgagtgatgcggtggtgtttgggtagaatgttcaaaattcataaccctaagttaacttgg |
65 |
Q |
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| T |
34980324 |
catgttgagtgatgcggcggtgtttgggtacaatgttcaaaattcataaccctaagttaacttgg |
34980260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 34984727 - 34984640
Alignment:
| Q |
93 |
agtgagaactaatacttaatgtgaaaaatgagaaccttcaataatagccgttagattaaattaacgaaccagattctaaacctaactt |
180 |
Q |
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| T |
34984727 |
agtgagaacttatacttaatgtgagaaacgataaccatcaataatagtcgttggattaaattaacggaccagattctaaacctaactt |
34984640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 27582836 - 27582719
Alignment:
| Q |
1 |
catgttgagtgatgcggtggtgtttgggtagaatgttcaaaattcataacccta-agttaacttggttggtataaatgtccacg-gatttatcaagtgag |
98 |
Q |
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| T |
27582836 |
catgttgagtgatgcggtggagtttgggtagaatgttcaaaattcctaaccctagagt----ttggttggtataaatatctgcgaaacgtatcaggtgag |
27582741 |
T |
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| Q |
99 |
aactaatacttaatgtgaaaaa |
120 |
Q |
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| T |
27582740 |
aactaatacttaatgtgaaaaa |
27582719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 27543513 - 27543402
Alignment:
| Q |
1 |
catgttgagtgatgcggtggtgtttgggtagaatgttcaaaattcataacccta-agttaacttggttggtataaatgtccacgg-atttatcaagtgag |
98 |
Q |
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| T |
27543513 |
catgttgagtgatgtggcggagtttgggtagaatgtttaaaattcctaaccctagagt----ttggttggtataaatatccacggaacgtattaggtgtg |
27543418 |
T |
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| Q |
99 |
aactaatacttaatgt |
114 |
Q |
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| T |
27543417 |
aactaatacttaatgt |
27543402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34992722 - 34992669
Alignment:
| Q |
1 |
catgttgagtgatgcggtggtgtttgggtagaatgttcaaaattcataacccta |
54 |
Q |
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| T |
34992722 |
catgttgagtgatgcggcagagtttgggtagaatgttcaaaattcctaacccta |
34992669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 34992630 - 34992584
Alignment:
| Q |
94 |
gtgagaactaatacttaatgtgaaaaatgagaaccttcaataatagc |
140 |
Q |
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| T |
34992630 |
gtgagaactaacacttaatgtgagaaacgagaaccatcaataatagc |
34992584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27581767 - 27581820
Alignment:
| Q |
1 |
catgttgagtgatgcggtggtgtttgggtagaatgttcaaaattcataacccta |
54 |
Q |
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||||||||||||||| | || ||||||||| ||||||||||||| |||||||| |
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| T |
27581767 |
catgttgagtgatgcagcggagtttgggtaaaatgttcaaaatttctaacccta |
27581820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 34984762 - 34984729
Alignment:
| Q |
21 |
tgtttgggtagaatgttcaaaattcataacccta |
54 |
Q |
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| T |
34984762 |
tgtttgggtagaatgttcaaaattcctaacccta |
34984729 |
T |
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