View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_58 (Length: 273)
Name: NF17288_low_58
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_58 |
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| [»] scaffold1430 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 6297513 - 6297732
Alignment:
| Q |
20 |
ttgtgccagctttgtatgtttttggtgattcaagcgtagatgctggaaacaataacaatttgaatacaattgttaaggttaatacatttccatatggcat |
119 |
Q |
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| T |
6297513 |
ttgtgccagctttgtatgtttttggtgattcaagcgtagatgctggaaacaataacaatttgaatacaattgctaaggttaatacatttccatatggcat |
6297612 |
T |
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| Q |
120 |
agatttcaataattgttctacaggaaggtttagcaatggtaaaacttttgcagatattattggtaagttttagttaggttcaccagttattcttgcttca |
219 |
Q |
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| T |
6297613 |
agatttcaataattgttctacaggaaggtttagcaatggtaaaacctttgcagatattattggtaagttttagttaggttcaccagttattcttgcttca |
6297712 |
T |
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| Q |
220 |
tctaaaactcacttaacacaat |
241 |
Q |
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||| |||||||| |||||||| |
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| T |
6297713 |
tct--aactcactcaacacaat |
6297732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 25461912 - 25462081
Alignment:
| Q |
20 |
ttgtgccagctttgtatgtttttggtgattcaagcgtagatgctggaaacaataacaatttgaatacaattgttaaggttaatacatttccatatggcat |
119 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||| |
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| T |
25461912 |
ttgtgcctgctttgtatgtttttggtgattcaaccgtagatgctggaaacaataacaatttgaatacacctgctaaggttaatatatttccatatggcat |
25462011 |
T |
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| Q |
120 |
agatttcaataattgttctacaggaaggtttagcaatggtaaaacttttgcagatattattggtaagttt |
189 |
Q |
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| T |
25462012 |
agatttcaataattgttctacaggaaggtttagcaatggaaaaacctttgcagatattattggtaagttt |
25462081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1430 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold1430
Description:
Target: scaffold1430; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 26 - 217
Target Start/End: Original strand, 640 - 832
Alignment:
| Q |
26 |
cagctttgtatgtttttggtgattcaagcgtagatgctggaa-acaataacaatttgaatacaattgttaaggttaatacatttccatatggcatagatt |
124 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| | ||||||||| |||||||| || |||||||||||||||||| |||| |||||||| |
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| T |
640 |
cagctttgtatgtttttggtgattcaaccgtagatgctggaatataataacaatatgaatacagatgctaaggttaatacatttccgtatgacatagatt |
739 |
T |
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| Q |
125 |
tcaataattgttctacaggaaggtttagcaatggtaaaacttttgcagatattattggtaagttttagttaggttcaccagttattcttgctt |
217 |
Q |
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| T |
740 |
tcaataattgttctacaggaaggtttagcaatggtaaaacctttgcagatattattggtaagttttggttaggttcgtcagttattcttgctt |
832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 19435780 - 19435995
Alignment:
| Q |
20 |
ttgtgccagctttgtatgtttttggtgattcaagcgtagatgctggaaacaataacaatttgaatacaattgttaaggttaatacatttccatatggcat |
119 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| || ||||| |||| |||||||||||||| |
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| T |
19435780 |
ttgtgccaactttgtatgtttttggtgattcaactgtagatgttggaaacaataacaatttgaatacagctgctaaggctaatgtgtttccatatggcat |
19435879 |
T |
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| Q |
120 |
agatttcaataattgttctaca----------ggaaggtttagcaatggtaaaacttttgcagatattattggtaagttt--tagttaggttcaccagtt |
207 |
Q |
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|||||| ||||||||||||||| | ||||| || ||||| |||||||||||||||||||||||||||||| ||| ||||||||| | || |
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| T |
19435880 |
agattttaataattgttctacattaaaacttttgcaggttcagtaatggaaaaacttttgcagatattattggtaagtttgatagctaggttcacaattt |
19435979 |
T |
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| Q |
208 |
attcttgcttcatcta |
223 |
Q |
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| T |
19435980 |
aatcttgcttcatcta |
19435995 |
T |
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