View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_59 (Length: 270)
Name: NF17288_low_59
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_59 |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 149 - 270
Target Start/End: Complemental strand, 18220654 - 18220533
Alignment:
| Q |
149 |
cttgtacatttgaaggtataagttagcggaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagctg |
248 |
Q |
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| T |
18220654 |
cttgtacatttgaaggtataagttagcagaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagctg |
18220555 |
T |
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| Q |
249 |
agatcagaagcacgaaagtata |
270 |
Q |
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| T |
18220554 |
agatcagaagcacgaaagtata |
18220533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 18220802 - 18220719
Alignment:
| Q |
1 |
atagatgggctgctgataggtaaatggttatttgtattcaaagatgtaaccnnnnnnncagtacacagttcagttttccacttg |
84 |
Q |
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| T |
18220802 |
atagatgggctgctgagaggtaaatggttatttgtatttaaagatgtaacctttttttcagtacacagttcagttttccacttg |
18220719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 148 - 270
Target Start/End: Complemental strand, 43012431 - 43012309
Alignment:
| Q |
148 |
ccttgtacatttgaaggtataagttagcggaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagct |
247 |
Q |
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| T |
43012431 |
ccttgtacatttgaaggtataagttagcagaggagaacatgttgaaggttatgaaggaaaaaggagctgtgtatggaaactcaataatgaggcaagagct |
43012332 |
T |
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| Q |
248 |
gagatcagaagcacgaaagtata |
270 |
Q |
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| T |
43012331 |
tagatcagaagcaagaaagtata |
43012309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 43012577 - 43012495
Alignment:
| Q |
1 |
atagatgggctgctgataggtaaatggttatttgtattcaaagatgtaaccnnnnnnncagtacacagttcagttttccacttg |
84 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||| |
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| T |
43012577 |
atagatgggctgctgagaggtaaatggttatttgtattcatagatgtaacc-ttttttcaatacacagttcagttttccacttg |
43012495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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