View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_6 (Length: 626)
Name: NF17288_low_6
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 245 - 611
Target Start/End: Complemental strand, 20910155 - 20909789
Alignment:
| Q |
245 |
ggacgacgaaagaaagttttctcatctcttaaccccttatcatcactaaccccaagcttccttgcatcaatgctactacaaacaagagcaccaagaagca |
344 |
Q |
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| T |
20910155 |
ggacgccgatagaaagttttctcatctcttaaccccttatcatcactaaccccaagcttccttgcatcaatgctactacaaacaagagcaccaagaagca |
20910056 |
T |
|
| Q |
345 |
caaaaagcagaacgcttgaacttgaagccatcttttgctataactagaaagtaaaagaactcgaaaatatttggtgtggnnnnnnngaagtgatgctagg |
444 |
Q |
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| T |
20910055 |
caaaaagcagaatgcttgaacttgaagccatcttttgctataactagaaagtaaaagaactcgaaaatatttggtgtggaaaaaaagaagtgatgctagg |
20909956 |
T |
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| Q |
445 |
gtttatatagcaaatgccaaaggccaaggtttaaccaaaacattaattaagaactttgaaattactatgagaacgctttaattttagggcaacttcttaa |
544 |
Q |
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| T |
20909955 |
gtttatatagcaaatgccaaaggccaaggtttaaccaaaacattaattaagaactttgaaattactatgagaacgctttaattttagggcaacttcttaa |
20909856 |
T |
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| Q |
545 |
ccatgcaagaacgcgttggatatacataaatgctttcaactggttccgtttgataaagagagaatat |
611 |
Q |
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| T |
20909855 |
ccatgcaagaacgcgttggatatacataaatgctttcaactgtttccgtttgaaaaagagagaatat |
20909789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 245 - 606
Target Start/End: Complemental strand, 20912898 - 20912537
Alignment:
| Q |
245 |
ggacgacgaaagaaagttttctcatctcttaaccccttatcatcactaaccccaagcttccttgcatcaatgctactacaaacaagagcaccaagaagca |
344 |
Q |
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| T |
20912898 |
ggacgatgaaagaaagttttctcatcatttaaccccttatca---ctaaccccaagcttccttgcatcaatgctactgcaaacaagagcaccaagaagca |
20912802 |
T |
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| Q |
345 |
caaaaagcagaacgcttgaacttgaagccatcttttgctataa----ctagaaagtaaaa-gaactcgaaaatatttggtgtggnnnnnnngaagtgatg |
439 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||| | |||||||||||||||| ||||||||| |
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| T |
20912801 |
caaaaagcagaacacttgaacttgaagccatcttgtgctatatatgtctagaaagtaaaaagaagtttaaaatatttggtgtggaaaaaatgaagtgatg |
20912702 |
T |
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| Q |
440 |
ctagggtttatatagcaaatgccaaaggccaaggtttaaccaaaacattaattaagaactttgaaattactatgagaacgctttaattttaggg-caact |
538 |
Q |
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| T |
20912701 |
ctagggtttatatagcaaatgccaagggc-aaggtttaaccaaaacattaattaggaactttgaaattactatgagaatgctttaattttagggacaact |
20912603 |
T |
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| Q |
539 |
tcttaaccatgcaagaacgcgttggatatacataaatgctttcaactggttccgtttgataaagagag |
606 |
Q |
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| T |
20912602 |
tcttaaccatgcaagaacgcgttgg--atacataaatgctttcaactgtttcagtttgaaaaagagag |
20912537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 245 - 606
Target Start/End: Complemental strand, 20921016 - 20920655
Alignment:
| Q |
245 |
ggacgacgaaagaaagttttctcatctcttaaccccttatcatcactaaccccaagcttccttgcatcaatgctactacaaacaagagcaccaagaagca |
344 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20921016 |
ggacgatgaaagaaagttttctcatcatttaaccccttatca---ctaaccccaagcttccttgcatcaatgctactgcaaacaagagcaccaagaagca |
20920920 |
T |
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| Q |
345 |
caaaaagcagaacgcttgaacttgaagccatcttttgctataa----ctagaaagtaaaa-gaactcgaaaatatttggtgtggnnnnnnngaagtgatg |
439 |
Q |
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||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||| | |||||||||||||||| ||||||||| |
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| T |
20920919 |
caaaaagcagaacacttgaacttgaagccatcttgtgctatatatgtctagaaagtaaaaagaagtttaaaatatttggtgtggaaaaaatgaagtgatg |
20920820 |
T |
|
| Q |
440 |
ctagggtttatatagcaaatgccaaaggccaaggtttaaccaaaacattaattaagaactttgaaattactatgagaacgctttaattttaggg-caact |
538 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
20920819 |
ctagggtttatatagcaaatgccaagggc-aaggtttaaccaaaacattaattaggaactttgaaattactatgagaatgctttaattttagggacaact |
20920721 |
T |
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| Q |
539 |
tcttaaccatgcaagaacgcgttggatatacataaatgctttcaactggttccgtttgataaagagag |
606 |
Q |
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| T |
20920720 |
tcttaaccatgcaagaacgcgttgg--atacataaatgctttcaactgtttcagtttgaaaaagagag |
20920655 |
T |
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