View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17288_low_61 (Length: 262)

Name: NF17288_low_61

Description: NF17288

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17288_low_61

[»] chr1 (3 HSPs)

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 61; E-Value: 3e-26

Query Start/End: Original strand, 12 - 80

Target Start/End: Complemental strand, 30004616 - 30004548

Alignment:

Q	12	atgaaatagaaaaaatatgaaatcaaaatgcacactctacttgaacaaaaggaaatgatgaagcttgat	80	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30004616	atgaaatagaaaaaatatgaaatcaaaatgcacactctccttgaacaaaaagaaatgatgaagcttgat	30004548	T

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Target: chr1; HSP #2

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 212 - 244

Target Start/End: Complemental strand, 30004417 - 30004385

Alignment:

Q	212	tgcacatgcattcataacatcaaaacctccatc	244	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30004417	tgcacatgcattcataacatcaaaacctccatc	30004385	T

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Target: chr1; HSP #3

Raw Score: 29; E-Value: 0.0000004

Query Start/End: Original strand, 106 - 134

Target Start/End: Complemental strand, 30004523 - 30004495

Alignment:

Q	106	ggtaccaccaacactctttagctttttct	134	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30004523	ggtaccaccaacactctttagctttttct	30004495	T

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