View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_62 (Length: 259)
Name: NF17288_low_62
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 51415132 - 51414898
Alignment:
| Q |
10 |
agtagcaaaggtaagaaaataaaagaaaaatcaaacaaactagaaagagaacatataaggtggaagatgatgagaagtcgaaagaacaagtgtcacactc |
109 |
Q |
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| T |
51415132 |
agtagaaaaggtaagaaaataaaagaaaaatcaaacaaactagaaagagaacatataaggtggaagatgatgagaagtcgaaagaacaagtgtcacactc |
51415033 |
T |
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| Q |
110 |
tcatnnnnnnnnntgataaacttgaattgagtattcaccacaagaataagaatgttcttaattaaatctaaagattgaattctcaatttgattgaaagct |
209 |
Q |
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| T |
51415032 |
tcataaaaaaaatt-ataaatttgaattgagtattcaccacaagaataagaatgttcttaattaaatctaaagattgaattctcaatttgattgaaagct |
51414934 |
T |
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| Q |
210 |
tatgnnnnnnnttaagactataaaaatgttatttat |
245 |
Q |
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| T |
51414933 |
tatgaaaaaaattaagactataaaaatgttatttat |
51414898 |
T |
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