View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_71 (Length: 236)
Name: NF17288_low_71
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 54961766 - 54961986
Alignment:
| Q |
1 |
tagaagtagaaatatattttacctgtcctgttatgatttattgattcaaattagagaaaacggtataatctgttctttggatactcaagtagttctacca |
100 |
Q |
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| T |
54961766 |
tagaagtagaaatatattttacctgtcctgttatgatttattgattcaaattagagaaaacggtataatctgttctttggatactcaagtagttctacca |
54961865 |
T |
|
| Q |
101 |
tgattcaaatcacgaagtagaaatgtacatattggtggctgagttcctaattattttgtgtgattcaggcaataaaccatggcttgacaagcttgactct |
200 |
Q |
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| T |
54961866 |
tgattcaaatcacgaagtagaaatgtacatattggtggctgagttcctaattattttgtgtgattcaggcaataaaccatggcatgacaagcttgactct |
54961965 |
T |
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| Q |
201 |
tgacaaagtgagggaaatttc |
221 |
Q |
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| T |
54961966 |
taacaaagtgagggaaatttc |
54961986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 54980997 - 54981064
Alignment:
| Q |
154 |
ttttgtgtgattcaggcaataaaccatggcttgacaagcttgactcttgacaaagtgagggaaatttc |
221 |
Q |
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|||||||||||||||| |||||||||||| |||| |||||| ||||||||||||||||||| |||| |
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| T |
54980997 |
ttttgtgtgattcaggtaataaaccatggtatgacgagcttgtttcttgacaaagtgagggaagtttc |
54981064 |
T |
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