View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_72 (Length: 235)
Name: NF17288_low_72
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 29074939 - 29074724
Alignment:
| Q |
1 |
aattaaaactgcctaacacaaacaaaagaaacgtttaattcttactctatcaatgtggttattgttttcaaaatttctccatcttttgtgaatggtctat |
100 |
Q |
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| T |
29074939 |
aattaaaactgcctaacacaaacaaaagaaacgtttaattcttactctatcaatgtagttattgttttccaaatttctccatcttttgtgaatggtctat |
29074840 |
T |
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| Q |
101 |
aaaataacttcagcaaaatacttttgaaagggattgaagaaagcattagaagagaatttgcacggacctgattaccagctatcaggaatcttgcactcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
29074839 |
aaaataacttcagcaaaatacttttgaaagggattgaagaaagcattagaagagaatttgcacggacctgattacaagctatcagaaatcttgcactcat |
29074740 |
T |
|
| Q |
201 |
gcaatcgacactttac |
216 |
Q |
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|||||||||||||||| |
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| T |
29074739 |
gcaatcgacactttac |
29074724 |
T |
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