View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17288_low_75 (Length: 229)
Name: NF17288_low_75
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_75 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 18775020 - 18775215
Alignment:
| Q |
19 |
gcattgcaacaagctaaatcacaattaccacatgctccagcaccaatgatacacacatttgttgatgaaggatcttgattgaataaacaagtgcatgcat |
118 |
Q |
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| T |
18775020 |
gcattgcaacaagctaaatcacaattaccacatgctccagcaccaatgatacacacatttgttgatgaaggatcttgattgaataaacaagtgcatgcat |
18775119 |
T |
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| Q |
119 |
cgaactcatcacaaaaagaacctaatccacttttaccatgaaggacattacaaatatctgcacaccttatgccttgacatctattgactatctctg |
214 |
Q |
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| T |
18775120 |
cgaactcatcacaaaaagaacctaatccacttttaccatgaaggacattacaaatatctgcacaccttatgccttgacatctattgactatctctg |
18775215 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 30437531 - 30437474
Alignment:
| Q |
59 |
caccaatgatacacacatttgttgatgaaggatcttgattgaataaacaagtgcatgc |
116 |
Q |
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| T |
30437531 |
caccaatgatacacacattcatcgatgaaggatcttgattgaataaacaagtgtatgc |
30437474 |
T |
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