View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17288_low_82 (Length: 206)

Name: NF17288_low_82
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17288_low_82
NF17288_low_82
[»] chr8 (2 HSPs)
chr8 (1-89)||(36323625-36323713)
chr8 (1-89)||(36330471-36330559)
[»] chr1 (1 HSPs)
chr1 (3-89)||(37919973-37920059)
[»] chr2 (1 HSPs)
chr2 (1-77)||(5458903-5458979)


Alignment Details
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 36323713 - 36323625
Alignment:
Q  1 ccatacattaaaagttaagctgacagaaccaccaacgcaaattgcaagcaagagaccattaaagaagctggacatttgtcttgcttctt 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36323713 ccatacattaaaagttaagctgacagaaccaccaacgcaaattgcaagcaagagaccattaaagaagctggacatttgtcttgtttctt 36323625  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 36330559 - 36330471
Alignment:
Q  1 ccatacattaaaagttaagctgacagaaccaccaacgcaaattgcaagcaagagaccattaaagaagctggacatttgtcttgcttctt 89  Q
    |||||||||||| |||||||||||||||||||||| |||||  |||||||||||| ||||||||||||| ||||||||||||| |||||    
T  36330559 ccatacattaaatgttaagctgacagaaccaccaatgcaaacagcaagcaagagagcattaaagaagctagacatttgtcttgtttctt 36330471  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 37920059 - 37919973
Alignment:
Q  3 atacattaaaagttaagctgacagaaccaccaacgcaaattgcaagcaagagaccattaaagaagctggacatttgtcttgcttctt 89  Q
    |||||||||| |||||| ||||||||||| ||| |||||   |||| |||||| ||||||| ||||| ||||||||||||| |||||    
T  37920059 atacattaaatgttaagttgacagaaccatcaatgcaaacaacaagtaagagaacattaaataagctagacatttgtcttgtttctt 37919973  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 5458979 - 5458903
Alignment:
Q  1 ccatacattaaaagttaagctgacagaaccaccaacgcaaattgcaagcaagagaccattaaagaagctggacattt 77  Q
    ||||||| | |||||||||||||| | |||||| | |||||  |||||||||||| ||||||||||  |||||||||    
T  5458979 ccatacaatgaaagttaagctgactgcaccacccatgcaaacagcaagcaagagaacattaaagaatgtggacattt 5458903  T

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