View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17288_low_85 (Length: 204)
Name: NF17288_low_85
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_85 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 58 - 190
Target Start/End: Original strand, 1589390 - 1589522
Alignment:
| Q |
58 |
tattattacatagctactatttcacaagtgagaaagttatgtgacaagaccataccactccttcggattctttttataagaaacatatgagtatacaaaa |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
1589390 |
tattattacatagctactatttcacaagtgagaaagttatgtgacacgaccataccactccttcggattttttttataagaaacatatgagtaaacaaaa |
1589489 |
T |
|
| Q |
158 |
gttaatgtatttaatctatattatgaactaaat |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1589490 |
gttaatgtatttaatctatattatgaactaaat |
1589522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 30443743 - 30443805
Alignment:
| Q |
128 |
tttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaat |
190 |
Q |
| |
|
||||||||||||||| ||| || |||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
30443743 |
tttttataagaaacaaatgggtcaacaaaagttaatgtatttggtctatattatgaaccaaat |
30443805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 43753749 - 43753814
Alignment:
| Q |
125 |
ttctttttataagaaacatatgagtatacaaaagttaatgtatttaatctatattatgaactaaat |
190 |
Q |
| |
|
|||| ||||||| ||||| |||||| |||||||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
43753749 |
ttctatttataataaacaaatgagtcaacaaaagttaatgtatttgatctacattatgaaccaaat |
43753814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 24097990 - 24098022
Alignment:
| Q |
152 |
acaaaagttaatgtatttaatctatattatgaa |
184 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
24097990 |
acaaaatttaatgtatttaatctatattatgaa |
24098022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University