View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17288_low_9 (Length: 600)
Name: NF17288_low_9
Description: NF17288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17288_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 16 - 584
Target Start/End: Original strand, 41094014 - 41094582
Alignment:
| Q |
16 |
caaaggaacggaaagaattgtgatccgaagctaaggtaattcaactatggagtctctagactcgtttgaggaagagcagtcacatcatcaatctccaacc |
115 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41094014 |
caaaggaacagaaagaattgtgatccgaagctaaggtaattcaactatggagtctctagactcgtttgaggaagagcagtcacatcatcaatctccaacc |
41094113 |
T |
|
| Q |
116 |
actggtggaggaggaggagtagtagtaggaggaccttttgaagatgacaataatagtaactatgaaggattcaattctcaacagcagtttgattatggat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41094114 |
actggtggaggaggaggagtagtagtaggaggaccttttgaagatgacaacaatagtaactatgaaggattcaattctcaacagcagtttgattatggat |
41094213 |
T |
|
| Q |
216 |
ccacattccatcctccaaataatcccgacgacgatcacctcaccgttgacaccagcaacaacatcaacaatgaccaacattctcctcccggatatggatt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41094214 |
ccacattccatcctccaaataatcccgacgacgatcacctcaccgttgacaccagcaacaacatcaacaatgaccaacattctcctcccggatatggatt |
41094313 |
T |
|
| Q |
316 |
cggagtttcaagccctaaccctaaccctgatttcgttactccgtttcaaaccaatgaaactgatgatggaatcttctcttctgaaggtcctgttcttcct |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41094314 |
cggagtttcaagccctaaccctaaccctgatttcgttactccgtttcaaaccaatgaaactgatgatggaatcttctcttctgaaggtcctgttcttcct |
41094413 |
T |
|
| Q |
416 |
gatcccactcaaatgcaagaggaaggctttgctagacgcgaatggcgaaggttacatttcnnnnnnnnctcttttgctgaaattaatctatatatatgta |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
41094414 |
gatcccactcaaatgcaagaggaaggctttgctagacgcgaatggcgaaggttacatttcttttttttctcttttgctgaaattaatctatatgtatgta |
41094513 |
T |
|
| Q |
516 |
ttgttacatgtaatgtgacttttgtgttatgggaaatggaagcttgtattattttgtattacaattttt |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41094514 |
ttgttacatgtaatgtgacttttgtgttatgggaaatggaagcttgtattattttgtattacaattttt |
41094582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University