View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17289_high_11 (Length: 243)
Name: NF17289_high_11
Description: NF17289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17289_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 38053485 - 38053261
Alignment:
| Q |
19 |
cttatgctaaaaatacccaagaagagtgatacctcgccggaatgaggattaatagtttgaagcacactctcaattgctttgtattccatcttagatgctt |
118 |
Q |
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| T |
38053485 |
cttatgctaaaaatacccaagaagagtgatacctcgccggaatgaggattaatagtttgaagcacactctcaattgctttgtattccatcttagatgctt |
38053386 |
T |
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| Q |
119 |
tttgagtgagttgaaatgaccttatgcaaaccacgtctctaccggcagcggttttgaaccggagcttaatctgtcccttggtttcggtttctcccgcaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38053385 |
tttgagtgagttgaaatgaccttatgcaaaccacgtctctaccggcagcggttttgaaccggagcttaatctgtcccttggtttcggtttctcccgcaac |
38053286 |
T |
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| Q |
219 |
cttcagtgaagcgaagacacaattt |
243 |
Q |
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||||||||| ||||||||||||||| |
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| T |
38053285 |
cttcagtgatgcgaagacacaattt |
38053261 |
T |
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