View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17289_high_13 (Length: 242)

Name: NF17289_high_13
Description: NF17289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17289_high_13
NF17289_high_13
[»] chr4 (2 HSPs)
chr4 (1-227)||(52351359-52351585)
chr4 (85-216)||(20297086-20297217)
[»] chr5 (13 HSPs)
chr5 (1-186)||(30474774-30474959)
chr5 (80-211)||(29871658-29871789)
chr5 (81-216)||(30749116-30749251)
chr5 (80-216)||(30242867-30243003)
chr5 (56-216)||(30522117-30522277)
chr5 (56-216)||(30562457-30562617)
chr5 (81-216)||(30399550-30399685)
chr5 (120-216)||(30430467-30430563)
chr5 (80-216)||(30482876-30483012)
chr5 (80-216)||(30713917-30714053)
chr5 (81-166)||(17982400-17982485)
chr5 (91-128)||(30206008-30206045)
chr5 (80-216)||(17418652-17418788)
[»] chr7 (1 HSPs)
chr7 (81-216)||(26706817-26706952)
[»] chr1 (2 HSPs)
chr1 (80-212)||(7098896-7099028)
chr1 (81-146)||(7582284-7582349)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 52351359 - 52351585
Alignment:
Q  1 ttgagatttgagtgaggttgaagcagatgaagtacttcaatagcattattggcacgtgtcttagttttaccacttttgctccatgacaggcataattctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  52351359 ttgagatttgagtgaggttgaagcagatgaagtacttcaatagcattattggcacgtgtcttagttttaccactgttgctccatgacaggcataattctc 52351458  T
Q  101 ggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52351459 ggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatc 52351558  T
Q  201 acgtaactctgccaagttgtgccccgt 227  Q
    |||||||||||||||||||||||||||    
T  52351559 acgtaactctgccaagttgtgccccgt 52351585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 216
Target Start/End: Complemental strand, 20297217 - 20297086
Alignment:
Q  85 gacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttc 184  Q
    |||| |||||||||  | |||||||||||||||||||||||||| ||| || | |||||||  |||| ||||| || || |||||  || ||||||||||    
T  20297217 gacaagcataattcatgaaggtcttttttacccatcaaattggcttcttgagcttcagatatactgccaacatcttttaagcctttgatactcagttttc 20297118  T
Q  185 cttctagctttagatcacgtaactctgccaag 216  Q
    |  | || ||||||||||||||||||| ||||    
T  20297117 caccaagttttagatcacgtaactctgtcaag 20297086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 30474774 - 30474959
Alignment:
Q  1 ttgagatttgagtgaggttgaagcagatgaagtacttcaatagcattattggcacgtgtcttagttttaccacttttgctccatgacaggcataattctc 100  Q
    |||||||||||||||||||||||||  | ||||||||    |||| || | |   |||||| ||||| |||| | || |||||||||| | ||||||||     
T  30474774 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagcagtagtagttggtgtctcagtttcaccattattcctccatgacaaggataattctt 30474873  T
Q  101 ggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttcct 186  Q
    ||||||| |||||||||||||||||||| | |||| | ||| ||||||| | ||||||| | || ||||  |||||||||||||||    
T  30474874 ggaggtcctttttacccatcaaattggcatgtcgagcttcaaataagctaccaacatttcccagaccttgtatgctcagttttcct 30474959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 211
Target Start/End: Original strand, 29871658 - 29871789
Alignment:
Q  80 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 179  Q
    ||||||||| ||||||||   | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | ||  ||||| || |||||    
T  29871658 tccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatccttcgatactcag 29871757  T
Q  180 ttttccttctagctttagatcacgtaactctg 211  Q
    ||||||  | || |||||||||||||||||||    
T  29871758 ttttccaccgagttttagatcacgtaactctg 29871789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 30749116 - 30749251
Alignment:
Q  81 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagt 180  Q
    |||||||| |||||||||  | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | ||  ||||  || ||||||    
T  30749116 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatcctttgatactcagt 30749215  T
Q  181 tttccttctagctttagatcacgtaactctgccaag 216  Q
    |||||  | || ||||||||||||||||||| ||||    
T  30749216 tttccaccgaggtttagatcacgtaactctgtcaag 30749251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 216
Target Start/End: Complemental strand, 30243003 - 30242867
Alignment:
Q  80 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 179  Q
    ||||||||| |||||||||  | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | || |  ||  || |||||    
T  30243003 tccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaagtgttggatactcag 30242904  T
Q  180 ttttccttctagctttagatcacgtaactctgccaag 216  Q
    ||||||  | || ||||||||||||||||||| ||||    
T  30242903 ttttccaccgaggtttagatcacgtaactctgtcaag 30242867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 216
Target Start/End: Complemental strand, 30522277 - 30522117
Alignment:
Q  56 gtgtcttagttttaccacttttgctccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaac 155  Q
    ||||||| |||||||  || ||| ||||||| | ||||| |||  | || ||||||||| | |||| |||||| |||||| | ||||| || || | |||    
T  30522277 gtgtcttggttttacgcctgttgttccatgagaagcatatttcctgaagttcttttttatctatcagattggcttctcgagcttcagacaaacttccaac 30522178  T
Q  156 attttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaag 216  Q
    |||||||||||    |||||| ||||||||  |||||||||||||| |||| |||||||||    
T  30522177 attttctaggcaagtaatgcttagttttccccctagctttagatcatgtaattctgccaag 30522117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 216
Target Start/End: Complemental strand, 30562617 - 30562457
Alignment:
Q  56 gtgtcttagttttaccacttttgctccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaac 155  Q
    ||||||| |||||||  || ||| ||||||| | ||||| |||  | || ||||||||| | |||| |||||| |||||| | ||||| || || | |||    
T  30562617 gtgtcttggttttacgcctgttgttccatgagaagcatatttcctgaagttcttttttatctatcagattggcttctcgagcttcagacaaacttccaac 30562518  T
Q  156 attttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaag 216  Q
    |||||||||||    |||||| ||||||||  |||||||||||||| |||| |||||||||    
T  30562517 attttctaggcaagtaatgcttagttttccccctagctttagatcatgtaattctgccaag 30562457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 30399550 - 30399685
Alignment:
Q  81 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagt 180  Q
    |||||||| |||||||||  | ||||||||||||||||||||||  ||| || || | | |||||| |||| || || || || |||||| || | ||||    
T  30399550 ccatgacaagcataattcatgaaggtcttttttacccatcaaatcagccgcttgagcttgagataaactgccaaaatcttttaagccttcgatacgcagt 30399649  T
Q  181 tttccttctagctttagatcacgtaactctgccaag 216  Q
    |||||  | || ||||||||||||||||||| ||||    
T  30399650 tttccaccgaggtttagatcacgtaactctgacaag 30399685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 30430467 - 30430563
Alignment:
Q  120 caaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaag 216  Q
    |||||| || |||||| | ||||| || || | |||||||||||| | |  |||||| ||||||||| |||||||||||||| |||| |||||||||    
T  30430467 caaatttgcttctcgagcttcagacaaacttccaacattttctagacatgtaatgcttagttttcctcctagctttagatcatgtaattctgccaag 30430563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 216
Target Start/End: Original strand, 30482876 - 30483012
Alignment:
Q  80 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 179  Q
    ||||||||| |||||||||  | ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | ||  ||||  ||   |||    
T  30482876 tccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataacctgccaacattgtttaatccttggatatgcag 30482975  T
Q  180 ttttccttctagctttagatcacgtaactctgccaag 216  Q
    ||||||  | || ||||||||||||||||||| ||||    
T  30482976 ttttccaccgaggtttagatcacgtaactctgtcaag 30483012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 216
Target Start/End: Complemental strand, 30714053 - 30713917
Alignment:
Q  80 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 179  Q
    ||||||||| | |||||||  | ||||||||||||||||||||||| ||| ||  | | ||| |||| |||| |||||| | ||  ||||  || |||||    
T  30714053 tccatgacaagtataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcaaataaactgccaacattgtttaatcctttgatactcag 30713954  T
Q  180 ttttccttctagctttagatcacgtaactctgccaag 216  Q
    ||||||  | || ||||||||||||||||||| ||||    
T  30713953 ttttccaccgaggtttagatcacgtaactctgtcaag 30713917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 17982400 - 17982485
Alignment:
Q  81 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggc 166  Q
    ||||||||||||||||||   ||||||||||||||| || ||||| || |||  ||| |||||||| || || ||||||| |||||    
T  17982400 ccatgacaggcataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaactactgacattttgtaggc 17982485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 30206008 - 30206045
Alignment:
Q  91 cataattctcggaggtcttttttacccatcaaattggc 128  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  30206008 cataattcctggaggtcttttttacccatcaaattggc 30206045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 216
Target Start/End: Complemental strand, 17418788 - 17418652
Alignment:
Q  80 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 179  Q
    |||| |||| |||||||||| |||||||||||||||| ||||| || || ||| || | ||||||||  | | ||||| || || |||||  || ||||     
T  17418788 tccacgacaagcataattcttggaggtcttttttacctatcaacttagcttcttgagcttcagataaattaccaacatcttttaagcctttgatactcaa 17418689  T
Q  180 ttttccttctagctttagatcacgtaactctgccaag 216  Q
    ||||||  | || |||||||||| ||||||| |||||    
T  17418688 ttttccaccgaggtttagatcacctaactctaccaag 17418652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 26706817 - 26706952
Alignment:
Q  81 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagt 180  Q
    |||||||| |||||||| |  ||||| |||||| |||||||||||||| ||| || | |||||||| |||| ||||| || || |||||| || ||||||    
T  26706817 ccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacatcttttaagccttcgatactcagt 26706916  T
Q  181 tttccttctagctttagatcacgtaactctgccaag 216  Q
    |||||  | || ||||||||||||||||||| ||||    
T  26706917 tttccaccgaggtttagatcacgtaactctgtcaag 26706952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 212
Target Start/End: Original strand, 7098896 - 7099028
Alignment:
Q  80 tccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcag 179  Q
    ||||||||| |||||||||   |||||||||||||||||| |||||||| |||  | | |||||||| || | |||||||| || |||||  ||   |||    
T  7098896 tccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccag 7098995  T
Q  180 ttttccttctagctttagatcacgtaactctgc 212  Q
     |||||| |||  ||||||||||||||||||||    
T  7098996 ctttcctcctaaatttagatcacgtaactctgc 7099028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 7582349 - 7582284
Alignment:
Q  81 ccatgacaggcataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataa 146  Q
    |||||||| |||||||||   ||||||||||||||||||||| ||||| ||| || | ||||||||    
T  7582349 ccatgacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataa 7582284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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