View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17289_high_3 (Length: 473)
Name: NF17289_high_3
Description: NF17289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17289_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 10332702 - 10333156
Alignment:
| Q |
1 |
caaacatggaactgatcaagcttcctggtggaaagaaagcaattgatttaaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaagca |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10332702 |
caaacatggaactaatcaagcttcctggtggaaagaaagcaattgatttcaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaagca |
10332801 |
T |
|
| Q |
101 |
caaagccaggcttgtagctaaagaattcttatggaaggaaggatttaactatactaaagttttctcaccagttgcatgacatgaaaccatcaggttagtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10332802 |
caaagccaggcttgtagctaaagaattcttatggaaggaaggatttaactatactaaagttttctcaccagttgcatgacatgaaaccatcaggttagtc |
10332901 |
T |
|
| Q |
201 |
attgtagtatagcaacaagcaaagcatggctactatatcacttagatgtaaaatcagcctttctgaatcaaagggaaagaagatagagtgttcaaactaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10332902 |
attgtagtatagcaacaagcaaagcatggctactatatcacttagatgtaaaatcagcctttctgaatcaaagggaaagaagatagagtgttcaaactaa |
10333001 |
T |
|
| Q |
301 |
acaaggctctatatagcttgaaatgagaacctagggcctagaatnnnnnnnttgacaaatgctttaagaaagaaggatttaagaaatgcattgttgagca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10333002 |
acaaggctctatatagcttgaaatgagaacctagggcctagaataaaaaaattgacaaatgctttaagaaagaaggatttaagaaatgcattgttgagca |
10333101 |
T |
|
| Q |
401 |
tggagtgtatgtaaaaggaagagaagagactagtttacttatcgtatgcttgtat |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10333102 |
tggagtgtatgtaaaaggaagagaagagactagtttacttatcgtatgcttgtat |
10333156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 31 - 176
Target Start/End: Complemental strand, 6372642 - 6372497
Alignment:
| Q |
31 |
gaaagaaagcaattgatttaaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaagcacaaagccaggcttgtagctaaagaattctt |
130 |
Q |
| |
|
||||||||||||| ||| | |||||||| || ||| | |||||||||| ||| |||||||||||||| || ||||| || ||||| |||| || ||||| |
|
|
| T |
6372642 |
gaaagaaagcaatagatgtcaaatgggtcttcaagtttaaattgaaccctgacgggaagattgtgaatcaaaaagcaagacttgtggctagaggtttctt |
6372543 |
T |
|
| Q |
131 |
atggaaggaaggatttaactatactaaagttttctcaccagttgca |
176 |
Q |
| |
|
|| ||| ||||| ||| | || ||| |||||||||||||| ||||| |
|
|
| T |
6372542 |
atagaatgaaggctttgattacactgaagttttctcaccaattgca |
6372497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 14639725 - 14639885
Alignment:
| Q |
33 |
aagaaagcaattgatttaaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaagcacaaagccaggcttgtagctaaagaattcttat |
132 |
Q |
| |
|
||||||||||| ||| | |||||||| |||||| |||||||||| | ||||||||||||||||||||||||||| || ||||| |||| || ||||| |
|
|
| T |
14639725 |
aagaaagcaatagatgttaaatgggtctttaagttgaaattgaatcctgaagggaagattgtgaagcacaaagctagacttgtggctagagttttcttga |
14639824 |
T |
|
| Q |
133 |
ggaaggaaggatttaactatactaaagttttctcaccagttgcatgacatgaaaccatcag |
193 |
Q |
| |
|
||||||||| ||| | |||||| |||| |||||||||||| || |||||||||||||||| |
|
|
| T |
14639825 |
agaaggaaggctttgattatactgaagtgttctcaccagttccaagacatgaaaccatcag |
14639885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 12196666 - 12196483
Alignment:
| Q |
9 |
gaactgatcaagcttcctggtggaaagaaagcaattgatttaaaatgggtttttaagctgaaattgaaccttgaagggaagattgtgaagcacaaagcca |
108 |
Q |
| |
|
|||||||| ||||||| | |||||| || ||||| ||| |||||| |||||| ||| | ||||| || | ||||||||||||||||| ||| |||| | |
|
|
| T |
12196666 |
gaactgataaagcttcgagatggaaaaaaggcaatagatataaaattggttttcaagttaaaatttaatcaagaagggaagattgtgaatcacgaagcaa |
12196567 |
T |
|
| Q |
109 |
ggcttgtagctaaagaattcttatggaaggaaggatttaactatactaaagttttctcaccagttgcatgacatgaaaccatcag |
193 |
Q |
| |
|
||||| | |||| || || || | ||||||||| ||| | || ||||||||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
12196566 |
ggcttttggctagaggtttatt-tagaaggaaggttttgattacactaaagttttctcaccagatgcaagacatgaaactatcag |
12196483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 33684702 - 33684740
Alignment:
| Q |
266 |
aatcaaagggaaagaagatagagtgttcaaactaaacaa |
304 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
33684702 |
aatcaaagggaaagaagatagagtgttcagactgaacaa |
33684740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 33701756 - 33701794
Alignment:
| Q |
266 |
aatcaaagggaaagaagatagagtgttcaaactaaacaa |
304 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
33701756 |
aatcaaagggaaagaagatagagtgttcagactgaacaa |
33701794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University