View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17289_low_1 (Length: 543)
Name: NF17289_low_1
Description: NF17289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17289_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 532
Target Start/End: Original strand, 32843541 - 32844052
Alignment:
| Q |
18 |
caagataaacaatacatactttttatcagctatgtgaattgttgaaaccaaatcaacctnnnnnnnnnnnnnnnnnnnnnnatagcatcaagaaaccaat |
117 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
32843541 |
caagataaacaatacatactcttcatcagctatgtgaattgttgaaatcaaatcaacctacaacaacaacaacaacaacaaatagcatcaagaaaccaat |
32843640 |
T |
|
| Q |
118 |
ctaagaaaacaaaacccgattgagaaaaaacaagaaagacacaaactttacaccaacctgaagatttggcttcaaaagagaccaaggaaacttcttctta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32843641 |
ctaagaaaacaaaacccgattgagaaaaaacaagaaaggcacaaactttacaccaacctgaagatttggcttcaaaagagaccaaggaaacttcttctta |
32843740 |
T |
|
| Q |
218 |
tatctaacaacagcagtctgcaacaaaccagtagaaccatcaattcctttcttgaacctcatgaaatcagctgaggaattgctttttagaaactgttctg |
317 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
32843741 |
tatttaacaacagcagtctgcaacaaaccagtagaaccatcaattcctttcttgaacctcatgaaatcagcaatggaattgctttgtagaaactgttctg |
32843840 |
T |
|
| Q |
318 |
gtgacccattttcttgttgaattgatgaagcaaaacaagttttgattttgagggtggaatttgaaaagggtggttttggaaatccaacaagaaaagaagg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32843841 |
gtgacccattttcttgttgaattgatgaagcaaaacaagttttgattttgagggtggaatttgaaaagggtggttttggaaatccaacaagaaaagaagg |
32843940 |
T |
|
| Q |
418 |
aaaagctttggaagttgatggtgaatcagagaagaatgaannnnnnnnnnnnnnnnnnngtgaagatattgttgaaattgaagttaacaccatttttgtg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32843941 |
aaaagctttggaagttgatggtgaatcagagaagaatgaa---gatgatgatgatgatggtgaagatattgttgaaattgaagttaacaccatttttgtg |
32844037 |
T |
|
| Q |
518 |
ttgttttatgatatt |
532 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
32844038 |
ttgttctatgatatt |
32844052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University