View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17289_low_14 (Length: 237)

Name: NF17289_low_14
Description: NF17289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17289_low_14
NF17289_low_14
[»] chr4 (1 HSPs)
chr4 (1-221)||(52350995-52351210)
[»] chr5 (9 HSPs)
chr5 (147-221)||(30474410-30474484)
chr5 (36-171)||(30399150-30399283)
chr5 (36-83)||(29852470-29852517)
chr5 (36-83)||(29871357-29871404)
chr5 (36-83)||(30059528-30059575)
chr5 (36-83)||(30339410-30339457)
chr5 (36-81)||(30482577-30482622)
chr5 (108-164)||(30205602-30205658)
chr5 (36-80)||(30243257-30243301)
[»] chr7 (1 HSPs)
chr7 (36-81)||(26706505-26706550)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 52351210 - 52350995
Alignment:
Q  1 ttaagcaatatggatgaggtgcggtatgtggacgttgatgaatctcacgatggtgtgggggtgagggttttcccatctctggaaaaagtgtctcgttact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  52351210 ttaagcaatatggatgaggtgcggtatgtggacgttgatgaatctcacgatggtgtgggggtgagggttttcccatctctggaaaaa--gtctcattact 52351113  T
Q  101 aggtttgccaaactttgaacggttattgaaaatggaaaggggggagatgttccctcgtctttctgatttgaccatttgtggttgccctaaacttgtgttg 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  52351112 aggtttgccaaactttgaacggttattgaaaatggaaaggcgggagatgttc---cgtctttctgatttgaccatttgtggttgccctaaacttgtgttg 52351016  T
Q  201 caattccttccatcccttaaa 221  Q
    |||||||||||||||||||||    
T  52351015 caattccttccatcccttaaa 52350995  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 30474484 - 30474410
Alignment:
Q  147 atgttccctcgtctttctgatttgaccatttgtggttgccctaaacttgtgttgcaattccttccatcccttaaa 221  Q
    ||||||| || ||||||| |||||||||||  || |||||||||||||||||||| || ||||||||||||||||    
T  30474484 atgttccttcttctttctaatttgaccattattgattgccctaaacttgtgttgccatgccttccatcccttaaa 30474410  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 171
Target Start/End: Complemental strand, 30399283 - 30399150
Alignment:
Q  36 tgatgaatctcacgatggtgtgggggtgagggttttcccatctctggaaaaagtgtctcgttactaggtttgccaaactttgaacggttattgaaaatgg 135  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||  ||   ||   |||||| |  | |||||| | ||  ||||||||||| |||    
T  30399283 tgatgaatctcaggatggtgtggaggtgagggttttcccatctctggaggaa--ctccatttactatgcctaccaaacatagaggggttattgaaagtgg 30399186  T
Q  136 aaaggggggagatgttccctcgtctttctgatttga 171  Q
    |||| ||||||||||| ||| |||||||||| ||||    
T  30399185 aaagaggggagatgtttccttgtctttctgagttga 30399150  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 29852517 - 29852470
Alignment:
Q  36 tgatgaatctcacgatggtgtgggggtgagggttttcccatctctgga 83  Q
    |||||||||| | |||||| ||| ||||||||||||||||||||||||    
T  29852517 tgatgaatctgaggatggtatggaggtgagggttttcccatctctgga 29852470  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 29871404 - 29871357
Alignment:
Q  36 tgatgaatctcacgatggtgtgggggtgagggttttcccatctctgga 83  Q
    |||||||||||| |||||| ||| ||||||| ||||||||||||||||    
T  29871404 tgatgaatctcaggatggtatggaggtgaggattttcccatctctgga 29871357  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 30059575 - 30059528
Alignment:
Q  36 tgatgaatctcacgatggtgtgggggtgagggttttcccatctctgga 83  Q
    |||||||||| | |||||| ||| ||||||||||||||||||||||||    
T  30059575 tgatgaatctgaggatggtatggaggtgagggttttcccatctctgga 30059528  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 30339410 - 30339457
Alignment:
Q  36 tgatgaatctcacgatggtgtgggggtgagggttttcccatctctgga 83  Q
    |||||||||| | |||||| ||| ||||||||||||||||||||||||    
T  30339410 tgatgaatctgaggatggtatggaggtgagggttttcccatctctgga 30339457  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 30482622 - 30482577
Alignment:
Q  36 tgatgaatctcacgatggtgtgggggtgagggttttcccatctctg 81  Q
    |||||||||||| |||||||||| ||||| |||||||| |||||||    
T  30482622 tgatgaatctcaggatggtgtggaggtgatggttttccgatctctg 30482577  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 30205658 - 30205602
Alignment:
Q  108 ccaaactttgaacggttattgaaaatggaaaggggggagatgttccctcgtctttct 164  Q
    |||||||| ||| ||||||||||| ||||||| || |||||||| ||| ||||||||    
T  30205658 ccaaacttagaagggttattgaaagtggaaagaggtgagatgtttccttgtctttct 30205602  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 30243257 - 30243301
Alignment:
Q  36 tgatgaatctcacgatggtgtgggggtgagggttttcccatctct 80  Q
    |||||||||| | |||||| ||| |||||||||||||||||||||    
T  30243257 tgatgaatctgaggatggtatggaggtgagggttttcccatctct 30243301  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 26706550 - 26706505
Alignment:
Q  36 tgatgaatctcacgatggtgtgggggtgagggttttcccatctctg 81  Q
    |||||||||||| |||||  ||| ||||||||||||||||||||||    
T  26706550 tgatgaatctcaggatggcatggaggtgagggttttcccatctctg 26706505  T

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