View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17289_low_2 (Length: 481)
Name: NF17289_low_2
Description: NF17289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17289_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 85 - 464
Target Start/End: Original strand, 18409344 - 18409722
Alignment:
| Q |
85 |
aaaataggtaggtaaatacttcgcaccaataacatggttaccaaatgctaccaaatagtctgcatcataactataattgtgaccgcatatatgtgacatt |
184 |
Q |
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| T |
18409344 |
aaaatagataggtaaatacttcgcaccaataacatggttatcaaatgctaccaaatagtctgcatcataactataattgtgaccgcatatatgcgacatt |
18409443 |
T |
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| Q |
185 |
tgcctacgattttttacaatatatcaaaatcacaaattaaa--tatcaaatagtttt-ttgaagggtttttaacctatttgatgaatggcatgaaaaact |
281 |
Q |
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| T |
18409444 |
tgcctacgattttttacaatatatcaaat----atttttaacctatttctttgtttttttgaagggtttttaacctatttgatgaatggcatgaaaaact |
18409539 |
T |
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| Q |
282 |
attgtggagtatataatgtacattgttgtgatcataagaaaaagagacaagagaacccctcagaaaatagatgttatggaaagcatatcaaacctgaaag |
381 |
Q |
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| T |
18409540 |
attgtggagtatataatgtacatttttgtgatgataagaaaaagagacaagagaacccctcagaaaatagatgttatggaaagcatatcaaacctgaaag |
18409639 |
T |
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| Q |
382 |
ttaaaaatatcctcaaatttaatgataatccttcctttgcatgtaatcaatgaagagacatttatcattggtttgaattttgc |
464 |
Q |
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| T |
18409640 |
ttaaaaatatcctcaaatttaatgataatccttcctttgcatgtaatcaatgaagagacatttctcattggtttgaattttgc |
18409722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 18409307 - 18409341
Alignment:
| Q |
31 |
agagactgtattaaatgtgctcggttagattcccc |
65 |
Q |
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| T |
18409307 |
agagactgtattaaatgtggtcggttagattcccc |
18409341 |
T |
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